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The map label for this gene is atpD

Identifier: 89898136

GI number: 89898136

Start: 379214

End: 379840

Strand: Direct

Name: atpD

Synonym: CF0329

Alternate gene names: 89898136

Gene position: 379214-379840 (Clockwise)

Preceding gene: 89898135

Following gene: 89898137

Centisome position: 32.52

GC content: 38.28

Gene sequence:

>627_bases
ATGTCTTCACAGATAAAGCTAACAAAAAATGCCTACCGTTTAGAAAAGATAAAGCTTGCGCGTCTAGAAACTTATTTGCC
GACGTTAAAATTAAAAATGGCGTTATTGCAGGTAGAAGTTGCTAATGCTGTTCGAGAATCTAGTGCAAGTATACAGGCAT
ATGAGGAGGCTAGAGAGAGTATTTATGCGTTTGCTGAGCTCTTCAGTATTCCTCTCTATGTGGATGCTATTGCAAATAGC
TTTAAGATAGAAAAGGTTGAAAAAGGCTATGAGAACATTACAGGAGTAGAAGTCCCTGTAGTAAAGAATATTGTTTTATC
AGAATCTTCCTATTCTGTTTTAGATACTCCTATATGGATTGATACGCTCGTCGCGTATTCTCGAGAGTTTGTCATTAATA
AAGTGCGCTCTGAAGTGGCTAGAGAAAAGCAAAGGATCCTAGAAGAAGAATTAAGAAACGTTTCGATTCGCGTGAATCTT
TTTGAGAAAAAACTCATTCCTGAGACTACTCGGATGATTAAGAAAATCGCTATTTTCTTAAGTGATCGTAGCATCACGGA
TGTCGGCCAAGTAAAGATGGCTAAGAAAAAGATACAGCAGCGTAAGGAGGAATCCGAATGCGCGTAA

Upstream 100 bases:

>100_bases
AAGAAGCTTTGGATATTGGTTGGAAAATTCTTGCTCAAAGTTTCCATTCTGAAGAAGTAGGAATAAAGGAACAATTGATC
AATAAGTATTGGCCGAAGTC

Downstream 100 bases:

>100_bases
ATGTAGATAAGTATCTCTTCATTGGAAGAAATCGATCAGAATTTTTTACTGCTTGTAGGGAACTTGGTGTTGTCGAGTTT
ATTTCTGATAAGAGATTTTC

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSSQIKLTKNAYRLEKIKLARLETYLPTLKLKMALLQVEVANAVRESSASIQAYEEARESIYAFAELFSIPLYVDAIANS
FKIEKVEKGYENITGVEVPVVKNIVLSESSYSVLDTPIWIDTLVAYSREFVINKVRSEVAREKQRILEEELRNVSIRVNL
FEKKLIPETTRMIKKIAIFLSDRSITDVGQVKMAKKKIQQRKEESECA

Sequences:

>Translated_208_residues
MSSQIKLTKNAYRLEKIKLARLETYLPTLKLKMALLQVEVANAVRESSASIQAYEEARESIYAFAELFSIPLYVDAIANS
FKIEKVEKGYENITGVEVPVVKNIVLSESSYSVLDTPIWIDTLVAYSREFVINKVRSEVAREKQRILEEELRNVSIRVNL
FEKKLIPETTRMIKKIAIFLSDRSITDVGQVKMAKKKIQQRKEESECA
>Mature_207_residues
SSQIKLTKNAYRLEKIKLARLETYLPTLKLKMALLQVEVANAVRESSASIQAYEEARESIYAFAELFSIPLYVDAIANSF
KIEKVEKGYENITGVEVPVVKNIVLSESSYSVLDTPIWIDTLVAYSREFVINKVRSEVAREKQRILEEELRNVSIRVNLF
EKKLIPETTRMIKKIAIFLSDRSITDVGQVKMAKKKIQQRKEESECA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_CHLFF (Q255D7)

Other databases:

- EMBL:   AP006861
- RefSeq:   YP_515246.1
- STRING:   Q255D7
- GeneID:   3959244
- GenomeReviews:   AP006861_GR
- KEGG:   cfe:CF0329
- eggNOG:   COG1394
- HOGENOM:   HBG352980
- OMA:   LFEKVMI
- ProtClustDB:   PRK02195
- BioCyc:   CFEL264202:CF0329-MONOMER
- HAMAP:   MF_00271
- InterPro:   IPR002699
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: 3.6.3.14

Molecular weight: Translated: 23866; Mature: 23735

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQIKLTKNAYRLEKIKLARLETYLPTLKLKMALLQVEVANAVRESSASIQAYEEARES
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYAFAELFSIPLYVDAIANSFKIEKVEKGYENITGVEVPVVKNIVLSESSYSVLDTPIWI
HHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHCCCHHH
DTLVAYSREFVINKVRSEVAREKQRILEEELRNVSIRVNLFEKKLIPETTRMIKKIAIFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHCCHHHHHHHHHHHHHH
SDRSITDVGQVKMAKKKIQQRKEESECA
CCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSQIKLTKNAYRLEKIKLARLETYLPTLKLKMALLQVEVANAVRESSASIQAYEEARES
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYAFAELFSIPLYVDAIANSFKIEKVEKGYENITGVEVPVVKNIVLSESSYSVLDTPIWI
HHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHCCCHHH
DTLVAYSREFVINKVRSEVAREKQRILEEELRNVSIRVNLFEKKLIPETTRMIKKIAIFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHCCHHHHHHHHHHHHHH
SDRSITDVGQVKMAKKKIQQRKEESECA
CCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA