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The map label for this gene is ydjX [C]

Identifier: 89255708

GI number: 89255708

Start: 262028

End: 262747

Strand: Direct

Name: ydjX [C]

Synonym: FTL_0276

Alternate gene names: 89255708

Gene position: 262028-262747 (Clockwise)

Preceding gene: 89255706

Following gene: 89255709

Centisome position: 13.82

GC content: 31.94

Gene sequence:

>720_bases
ATGATAACTCAAACTATGTTTAATAGTAAATTTTATAGGTTTTTACCTGTAGTATTTTTAATTATTGGTATTATCGAATT
TTTTAGTTTTGGTGGGCAAAGTTATTTATCACTAAATGCGTTAAAAGATAATTATCAAAGTATTATAGTCTTTGCAAATA
ATCATTTCTTGTTAAGTATATTAGTTTTCTCATGCGCTTATATAATTGTTGTAGCACTTTCAATTCCAGGAGCTACTATT
ATGACCTTGCTTGGAGGGTTATTATTTGGCTTGCTATTAGGATCTTTTGTTGTCGTTGTCGCTGCTACGGTTGGGGCTAG
TGTGGTTTTTTTTGCAGTAAAAACTGCATTAGGAGACTCTCTAAAGACTAAAGCTAAAGGCGGTATAGAGAAAATGCGTC
GTGGTTTTGAGAGGGATGTTTTTAATTATCTACTATTACTAAGATTAATTCCGATATTCCCTTTCTTTATCATAAATATT
GCTGCAGGAATGTTTGGCGTTAAATTTAGGGATTTCTTCTGGGCAACATTGCTTGGGATAATTCCTGGTAGTGTTGTTTA
TGTATGGGTTGGTACTAGTTTTGCATATGCAATTCAACAAGGTGATGAGATTAACTTAGGTATTATATTAGAACCACAAT
TTATTGTACCAATAGTTGCTTTGGCGATATTATCAGTCGTCCCTGTATTCATCAAAAAATTTAATAAAAAGGCTTATTAA

Upstream 100 bases:

>100_bases
GCATAAAATACGGTTTTATAGCTCTTTTTATTGATCGCAGCTAAATAAATTTGATGAGTTTCTTTGAGCATAGGTATATT
ATGTTTATTATGTCTTTTAA

Downstream 100 bases:

>100_bases
TTATGATTAAAGCAGATATTTGTATTATTGGTGGAGGGTCTGGTGGGCTTTCTGTTGCGGCTGGGGCAGTACAAATGGGT
GCAAAAGTCGTTTTGTGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MITQTMFNSKFYRFLPVVFLIIGIIEFFSFGGQSYLSLNALKDNYQSIIVFANNHFLLSILVFSCAYIIVVALSIPGATI
MTLLGGLLFGLLLGSFVVVVAATVGASVVFFAVKTALGDSLKTKAKGGIEKMRRGFERDVFNYLLLLRLIPIFPFFIINI
AAGMFGVKFRDFFWATLLGIIPGSVVYVWVGTSFAYAIQQGDEINLGIILEPQFIVPIVALAILSVVPVFIKKFNKKAY

Sequences:

>Translated_239_residues
MITQTMFNSKFYRFLPVVFLIIGIIEFFSFGGQSYLSLNALKDNYQSIIVFANNHFLLSILVFSCAYIIVVALSIPGATI
MTLLGGLLFGLLLGSFVVVVAATVGASVVFFAVKTALGDSLKTKAKGGIEKMRRGFERDVFNYLLLLRLIPIFPFFIINI
AAGMFGVKFRDFFWATLLGIIPGSVVYVWVGTSFAYAIQQGDEINLGIILEPQFIVPIVALAILSVVPVFIKKFNKKAY
>Mature_239_residues
MITQTMFNSKFYRFLPVVFLIIGIIEFFSFGGQSYLSLNALKDNYQSIIVFANNHFLLSILVFSCAYIIVVALSIPGATI
MTLLGGLLFGLLLGSFVVVVAATVGASVVFFAVKTALGDSLKTKAKGGIEKMRRGFERDVFNYLLLLRLIPIFPFFIINI
AAGMFGVKFRDFFWATLLGIIPGSVVYVWVGTSFAYAIQQGDEINLGIILEPQFIVPIVALAILSVVPVFIKKFNKKAY

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI66392190, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI87081964, Length=132, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788049, Length=152, Percent_Identity=31.5789473684211, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17532687, Length=171, Percent_Identity=29.2397660818713, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115533785, Length=169, Percent_Identity=28.9940828402367, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI18859941, Length=180, Percent_Identity=25.5555555555556, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 26384; Mature: 26384

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITQTMFNSKFYRFLPVVFLIIGIIEFFSFGGQSYLSLNALKDNYQSIIVFANNHFLLSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHCCCEEEEEEECCHHHHHH
LVFSCAYIIVVALSIPGATIMTLLGGLLFGLLLGSFVVVVAATVGASVVFFAVKTALGDS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LKTKAKGGIEKMRRGFERDVFNYLLLLRLIPIFPFFIINIAAGMFGVKFRDFFWATLLGI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPGSVVYVWVGTSFAYAIQQGDEINLGIILEPQFIVPIVALAILSVVPVFIKKFNKKAY
CCCCEEEEEECCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MITQTMFNSKFYRFLPVVFLIIGIIEFFSFGGQSYLSLNALKDNYQSIIVFANNHFLLSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHCCCEEEEEEECCHHHHHH
LVFSCAYIIVVALSIPGATIMTLLGGLLFGLLLGSFVVVVAATVGASVVFFAVKTALGDS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LKTKAKGGIEKMRRGFERDVFNYLLLLRLIPIFPFFIINIAAGMFGVKFRDFFWATLLGI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPGSVVYVWVGTSFAYAIQQGDEINLGIILEPQFIVPIVALAILSVVPVFIKKFNKKAY
CCCCEEEEEECCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]