Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 89255507

GI number: 89255507

Start: 59810

End: 60478

Strand: Direct

Name: yggS [C]

Synonym: FTL_0060

Alternate gene names: 89255507

Gene position: 59810-60478 (Clockwise)

Preceding gene: 89255506

Following gene: 89255510

Centisome position: 3.15

GC content: 33.33

Gene sequence:

>669_bases
ATGATTGATAAAGAATTTATCCAAAAATCATATACTAGTATTATGCAAAATATAGACTCAAAGGTTAGGCTTTTGGCTGT
TAGTAAATATCAGTCTATAGATAAAATAGAGTACTTAGCAGGCCTTGGTCAGTTAGATTTTGGTGAGAATTATTTTCAAG
AGTTAGAACAGAAAGCTCAAAAGTTACCTCATCTAAGATGGCATTTCATCGGTTCGCTACAGTCACGGAAGATAAAGCAT
ATTGTTAAATATGCTAGTTCAATTCAAAGTGTCGAAAACATAGAGCATCTCGAAAAAATTGATAAAGCAGCAGGACAAAT
AGCTAAAATAGTAGATGTTTTTTTACAGATAAATATAGATGACGATATTAATAAGTCTGGTTTTGAATCGACACAATTAG
AGGAAGTTGTCGCAAGTATAATGAAAGCTAAAAGTTTTATGAACCTCAAGATAGTTGGGCTAATGTGTATCCCTGCAAAA
ACTAACGCTCCAGAGAAGAGTTTCGCAAAGATGAAGCATTTTTTTGATACTGTCAACTTTAGATTAAATGATGATCTAAA
GCTATCGAGACTATCAATGGGGATGAGCGCTGATTATAGATTAGCTATACAATATGGTAGTACCGATGTTAGAGTAGGTA
GTAGTTTATTTGGTGCAAGAGCTACCTAA

Upstream 100 bases:

>100_bases
AGCGAAACTTAGAATCTTTGCCTTTAAATATTGAGAAATATAGTATAAAAGTTCCTTTCTTAAATGCTGAGAGAAATCTT
ATTGTAATGAGGAAGAAATT

Downstream 100 bases:

>100_bases
CTATTCTTTTATTTATATAATTGGCAAATATCCTTTTATATATTTCATTTACTGTTAGTACAATTCCTACAGCTACTAGT
GTTTCTAGTGCTCTATCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIDKEFIQKSYTSIMQNIDSKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRWHFIGSLQSRKIKH
IVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAK
TNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT

Sequences:

>Translated_222_residues
MIDKEFIQKSYTSIMQNIDSKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRWHFIGSLQSRKIKH
IVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAK
TNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT
>Mature_222_residues
MIDKEFIQKSYTSIMQNIDSKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRWHFIGSLQSRKIKH
IVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAK
TNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=213, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=1e-23,
Organism=Escherichia coli, GI1789321, Length=212, Percent_Identity=32.5471698113208, Blast_Score=103, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=238, Percent_Identity=35.7142857142857, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=213, Percent_Identity=36.6197183098592, Blast_Score=108, Evalue=6e-25,
Organism=Drosophila melanogaster, GI45550861, Length=218, Percent_Identity=37.1559633027523, Blast_Score=105, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25194; Mature: 25194

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00589 PTS_HPR_SER ; PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKEFIQKSYTSIMQNIDSKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KLPHLRWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINID
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNF
CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCE
RLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT
EECCCCHHHHHHCCCCCCEEEEEEECCCCEEECHHHHCCCCC
>Mature Secondary Structure
MIDKEFIQKSYTSIMQNIDSKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KLPHLRWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINID
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNF
CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCE
RLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT
EECCCCHHHHHHCCCCCCEEEEEEECCCCEEECHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]