| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89056586
Identifier: 89056586
GI number: 89056586
Start: 4202628
End: 4203899
Strand: Direct
Name: 89056586
Synonym: Jann_4095
Alternate gene names: NA
Gene position: 4202628-4203899 (Clockwise)
Preceding gene: 89056585
Following gene: 89056597
Centisome position: 97.33
GC content: 57.47
Gene sequence:
>1272_bases ATGTCCAAAACAGCTATTGCCATTATTGTTGGGATATTGGCGTCAAACGCCTCGGCGCAGACGATTTTGCTGCCTGACGA TGGGCAAAGGATCGTTGGATCCGGCAATTTCGTGGGTGAAGGCACAGAACACTCGGGGGCCTTTTCCAGCGGCTACTTCG GCGTATTGAACCAAAGCGCCGACCGGGCCTTGATGTTCGATGTTGGGCTTAGCATGGATTGGTCGGACGGGTGGAACCGC ACATCCGGCACCCTCTACGCCGGGATCATCCATCGTTCGATGTTGGGAAATGGCGCGGTTCTGGGCTTCAACGCCTACGT TGATGCGGGCCTTCTGAACAGTGAGATCGCAGGCCTTGTGTCAGCTGGCGTCGAATATCACCCCGCTCTCGGTGGCGATG TGGAACTACTTTTCGCGGGCAATCTTTATCACGCTTTCGAGGATTATACCGACACCGGGGCGTTCGGCGCGGCGGCGACG ATCCCCCGCAGCGGCGCGGATGCGTTCGTTACAGTGGACTACACTTTGGGTGACGGCCTGAGTCTGACCGGCACTGGCGG CATATTCGGATATGTCGGAACCGATTTTGCGCAAGAGCTGATCGGGGCACGGATGGACTTCGGGGCGCGTTATATGCTGA ATCCTCAGACGATCATTTCCGGTAGTGTTGGGGCGCGGGTTGCGGACGGGCGTGACACGGAACTCGTTGCAAGCCTCGGC CTTCAAATTGCGCTTGGGGGTGGGTCAGGTGGCGCCATGTCGACCATGTCATCCTCCGGCATCGTCGACCCGCCCGAAGA ACGACAGGCCGTCATAAGGGCCGCCAGACCAAATGGGGTTCTCGTTGCACCCCCAACGCGGCACTTCGGATATGGGACGC CCTTCACACCGGTCGAGTCCACCGGAGGAGGCAATACACCGCAGCCCACAGCCCTCCTGGCCTGCCAAGCCATTATTATT CCAGGTCCTGAGGGGACTGGAACACTTGCGGCTCAAGCCTGTTCCATTGATGGCAATGCTGGAATTCCATTGGGATCAAG CGCACAGGTCTCGGCGGGTGTCCCGATAGAAATCGTATTTCCAGAATTTGAGGCCCCTTCCCTAACGATGGGAGAGGTGG CCGATTTCATATGTGTCGATGGCAGCAATATGAACGCAGCCGTGGCATTCAGCGTGACCAGCACATCTCCGAGTAACTCG TCGATTACACTTGTCGCCGAGAGTGGCACGGATGTGCTTTGCACCGTCTCTTTCAGAAATGTCGGAATTTAA
Upstream 100 bases:
>100_bases ATCTGGCAGGTAATCGGATGCCTTTGTGGTCGGCCCCAAACAGCCAGTCAGAGGCTTGCCCGAATTGCCAATCAGAACAG TCCCGTTGGAGAGCCAACTA
Downstream 100 bases:
>100_bases ACGCGGCTGACCGTCTTAAACGGTCCAGAGAAGTGCGGAACTGCACATCTTCTTGTTGGAAGCGGTGAATGGGGGCGTAG GTTTAGTCAGGTTGGCGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MSKTAIAIIVGILASNASAQTILLPDDGQRIVGSGNFVGEGTEHSGAFSSGYFGVLNQSADRALMFDVGLSMDWSDGWNR TSGTLYAGIIHRSMLGNGAVLGFNAYVDAGLLNSEIAGLVSAGVEYHPALGGDVELLFAGNLYHAFEDYTDTGAFGAAAT IPRSGADAFVTVDYTLGDGLSLTGTGGIFGYVGTDFAQELIGARMDFGARYMLNPQTIISGSVGARVADGRDTELVASLG LQIALGGGSGGAMSTMSSSGIVDPPEERQAVIRAARPNGVLVAPPTRHFGYGTPFTPVESTGGGNTPQPTALLACQAIII PGPEGTGTLAAQACSIDGNAGIPLGSSAQVSAGVPIEIVFPEFEAPSLTMGEVADFICVDGSNMNAAVAFSVTSTSPSNS SITLVAESGTDVLCTVSFRNVGI
Sequences:
>Translated_423_residues MSKTAIAIIVGILASNASAQTILLPDDGQRIVGSGNFVGEGTEHSGAFSSGYFGVLNQSADRALMFDVGLSMDWSDGWNR TSGTLYAGIIHRSMLGNGAVLGFNAYVDAGLLNSEIAGLVSAGVEYHPALGGDVELLFAGNLYHAFEDYTDTGAFGAAAT IPRSGADAFVTVDYTLGDGLSLTGTGGIFGYVGTDFAQELIGARMDFGARYMLNPQTIISGSVGARVADGRDTELVASLG LQIALGGGSGGAMSTMSSSGIVDPPEERQAVIRAARPNGVLVAPPTRHFGYGTPFTPVESTGGGNTPQPTALLACQAIII PGPEGTGTLAAQACSIDGNAGIPLGSSAQVSAGVPIEIVFPEFEAPSLTMGEVADFICVDGSNMNAAVAFSVTSTSPSNS SITLVAESGTDVLCTVSFRNVGI >Mature_422_residues SKTAIAIIVGILASNASAQTILLPDDGQRIVGSGNFVGEGTEHSGAFSSGYFGVLNQSADRALMFDVGLSMDWSDGWNRT SGTLYAGIIHRSMLGNGAVLGFNAYVDAGLLNSEIAGLVSAGVEYHPALGGDVELLFAGNLYHAFEDYTDTGAFGAAATI PRSGADAFVTVDYTLGDGLSLTGTGGIFGYVGTDFAQELIGARMDFGARYMLNPQTIISGSVGARVADGRDTELVASLGL QIALGGGSGGAMSTMSSSGIVDPPEERQAVIRAARPNGVLVAPPTRHFGYGTPFTPVESTGGGNTPQPTALLACQAIIIP GPEGTGTLAAQACSIDGNAGIPLGSSAQVSAGVPIEIVFPEFEAPSLTMGEVADFICVDGSNMNAAVAFSVTSTSPSNSS ITLVAESGTDVLCTVSFRNVGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42873; Mature: 42742
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTAIAIIVGILASNASAQTILLPDDGQRIVGSGNFVGEGTEHSGAFSSGYFGVLNQSA CCCHHEEEEEEHHHCCCCCEEEEECCCCCEEEECCCEECCCCCCCCCCCCCEEEEECCCC DRALMFDVGLSMDWSDGWNRTSGTLYAGIIHRSMLGNGAVLGFNAYVDAGLLNSEIAGLV CEEEEEEECCEEECCCCCCCCCCEEEEEEHHHHHCCCCEEEEEEHEECCCCHHHHHHHHH SAGVEYHPALGGDVELLFAGNLYHAFEDYTDTGAFGAAATIPRSGADAFVTVDYTLGDGL HCCCEECCCCCCCEEEEEECCCHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEEEECCCE SLTGTGGIFGYVGTDFAQELIGARMDFGARYMLNPQTIISGSVGARVADGRDTELVASLG EEEECCCEEECCCHHHHHHHHHHHCCCCCEEEECCHHEEECCCCCEEECCCCHHHHEECC LQIALGGGSGGAMSTMSSSGIVDPPEERQAVIRAARPNGVLVAPPTRHFGYGTPFTPVES EEEEEECCCCCCCEECCCCCCCCCCHHHHHHHEECCCCCEEECCCCHHCCCCCCCCCCCC TGGGNTPQPTALLACQAIIIPGPEGTGTLAAQACSIDGNAGIPLGSSAQVSAGVPIEIVF CCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE PEFEAPSLTMGEVADFICVDGSNMNAAVAFSVTSTSPSNSSITLVAESGTDVLCTVSFRN CCCCCCCCCHHHCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEECC VGI CCC >Mature Secondary Structure SKTAIAIIVGILASNASAQTILLPDDGQRIVGSGNFVGEGTEHSGAFSSGYFGVLNQSA CCHHEEEEEEHHHCCCCCEEEEECCCCCEEEECCCEECCCCCCCCCCCCCEEEEECCCC DRALMFDVGLSMDWSDGWNRTSGTLYAGIIHRSMLGNGAVLGFNAYVDAGLLNSEIAGLV CEEEEEEECCEEECCCCCCCCCCEEEEEEHHHHHCCCCEEEEEEHEECCCCHHHHHHHHH SAGVEYHPALGGDVELLFAGNLYHAFEDYTDTGAFGAAATIPRSGADAFVTVDYTLGDGL HCCCEECCCCCCCEEEEEECCCHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEEEECCCE SLTGTGGIFGYVGTDFAQELIGARMDFGARYMLNPQTIISGSVGARVADGRDTELVASLG EEEECCCEEECCCHHHHHHHHHHHCCCCCEEEECCHHEEECCCCCEEECCCCHHHHEECC LQIALGGGSGGAMSTMSSSGIVDPPEERQAVIRAARPNGVLVAPPTRHFGYGTPFTPVES EEEEEECCCCCCCEECCCCCCCCCCHHHHHHHEECCCCCEEECCCCHHCCCCCCCCCCCC TGGGNTPQPTALLACQAIIIPGPEGTGTLAAQACSIDGNAGIPLGSSAQVSAGVPIEIVF CCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE PEFEAPSLTMGEVADFICVDGSNMNAAVAFSVTSTSPSNSSITLVAESGTDVLCTVSFRN CCCCCCCCCHHHCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEECC VGI CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA