| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056556
Identifier: 89056556
GI number: 89056556
Start: 4169734
End: 4172694
Strand: Direct
Name: 89056556
Synonym: Jann_4065
Alternate gene names: NA
Gene position: 4169734-4172694 (Clockwise)
Preceding gene: 89056555
Following gene: 89056557
Centisome position: 96.57
GC content: 66.97
Gene sequence:
>2961_bases ATGTTTGACACGTCCACCACCGCGCGCGTCTTCGCCACGCCTTTGGGTGTCGACTTTTGCGCCGCGCTCATCGACGGGCT TGATCGGGCGCTGAGCGGCCAAGGCCCCGAGGCGCTCGCGCGGGTGGAGATCCACGTCGCCAATGCCCGGATGCAGCGCC GGTTGCAGACGCTCTACATCCGGCGCGGGCCAGGGCTTTTGCCCCGCATCCGGCCCGTCCTGTCGCTCTCCGAGACGGCG GATCTGGAGGGATTGCCCCCTGCCATGTCACCGCTGGCCCTGCGACTGGAGCTGGCGCAACTGATCGGCAAACTGATCGA CGCCAACCCTGATCTTGCACCCCGCGCGGCCCTTTATGATCTTGCTGACAGCCTTGCGGATTTCATGGGCGAAATGGTGG AGGAAGGGGTCACGCCCGATACCATCGCGAGTCTCGATATGGGCGAGCATTCCGAGCATTGGACCCGCGCACGGGATTTC CTCGGCATCGCACAGCAGGTCATCGCGACGGGCGACCGCCCCACGCCGGAAGGGCGACAGGCCGCTGTCGTTGATCGCCT CATTGCTCAGTGGCGGATCAACCCACCGACCCATCCGGTGATCGTCGCAGGCTCCACCGGCTCGCGGCGCGCGACCTTTC GGCTGATGGAGGCGGTGGCGCACTTGCCCCAGGGCGCGGTGATCCTGCCCGGCATCGACCGGGACATGCCCGGTGCCATC TGGCGCGGGCTGCTGGACGGGCGGCGCAGTGGTCTGGCGGGGGAGGATCACCCGCAATACCGGCTCGCCAAACTGTTGGA TGCGGTGGGGATGGACCCGGCGACGGTACCGCTCTGGGGCCGTGCCACGCCTGCCGTTCCGGCTCGCAATGCCGTCGTCT CCCTCGCCCTGCGCCCCGCGCCGGTGACCAACCAATGGCGGACGGAGGGTCCAAAACTGACCGATGTAAGCGGGGCCATG GCAGGCGTCACCCTGCTGGAGGCGCCGTCGCCGCAGATGGAGGCCACCGCCATAGCATTGCGGATGCGCAAGGGCGTTGC CGACGGTCAGCGCGTGGCGCTTGTCACGCCCGACCGCAGGCTGGCCCGCAAGGTGACGGCACAATTGGACCGCTGGCGCA TCTTGCCCGATGACAGCGCGGGGCAGGTGTTGGCCCAGACCGCGCCGGGCCGCTTCCTGCGCCAGGTCGCCGAAATGCTA TGCGGTCCCGTCACCGCGGAGGCGATGGTCGCGCTGTTGAAAAACCCGCTCTGCAATTCAGGCCCCGACCGGGGCAATCA TCTGCGCCGCACGGTGGACCTTGAATTGCAACTCCTGCGCAAGGGCCTCACCTTTCCCACCCGCGCAGCCCTGATGGACT GGGCCGCAGCGCGCAAGGATGACGTCGACACGACGGCTTGGGTGACCTGGCTGGCAGATCACCTGTTGGAACCGGTGGAA ACGGCCGCCCTGCCGTTGGCCGAGCGCGTCGCGCTGCACAAATCCCGCGCAGATGCGCTGGCGGCGGGCGTCGATCAGAC GACCACGCACGAATTGTACAAGCAGGAACCCGGCGAAAAAGCAGAGACCCTTCTGCGAGAACTTCAGGCCGTGGCCGATA CGGGCGGCGCCATGTCCGCCCGCGATTACGCTGATTTCTTCACCGCGCTGGCCCATGACCGGGAGGTTCGATTTGCCCTG CGCCCCCATGCCGATGTCCTGATCTGGGGCACGCAGGAGGCCCGCGTTCAGGGCGCGGATGTCACCATCCTCGCGGGTCT GAACGAGGGGACCTGGCCCCAGGCTGCCAGCGCTGATCCGTGGCTGAACCGCCCGCTGCGCGCCGATGCCGGGCTGCGTC TGCCGGACCGGGTCATCGGTCTGTCCGCCCATGATTTCCAGCAGGGCATCGCTGGGGGTGAGGTTTGGCTGAGCCGCGCC AAGCGCGATGATGAGACCGATACCGTCCCGGCCCGTTGGCTAAACCGTCTGGTCAATCTTCTGGGCGGCGCAAGCGATGC ATCCAGCCAGGCGCTGACCGATATGCAAGCGCGGGGGGCGGAGTGGCTGACGCTGGCCGACACGCTCTCCACCCCCGATG CCCGCGAAACACCTGCGCCCCGACCCGCCCCCGCGCCGCAGAATATCACCCGCCTCACCGCCCTGTCCGTCACGGATATC GAGCGGTTGATCCGCGATCCCTATGCCATTTACGCGGCCCGAATGCTCAACCTGCGCGCGCTCGACCCTCTCCGCGCCAG CCCCGACGCCCGCCTGCGCGGCACCGTCTTCCACCGGATCATGGAGCAGTTCATCACCGCCACGCCCACCGACCTGCCCG AGGATGCGGGTCAGGTGTTCATGGGTCTAGCCGGGGACATTCTTGCACAAGATGCCCCCTGGCCCGCCGCCCGCCATTTG TGGCGGCATCGGTTGCAAACAATCCTGCCCTGGTATCTGGCGCAGGAGGCGTCGTTTCGCGCGTTAGCGGAGCCTTGGGT GCTAGAGGAGCGCAAGGACTGGCACGTCCCCGGCCTCGGCATGACCCTGAGCGGCATCGCGGACCGGATCGACAGCCTGC CCGATGGACGCGTGGCGATTTATGACTACAAGACCGGCAATCTGCCCACCGACAGGATGGAAATCGCCTATAACAAGCAG CTGCTTTTGCTGGCCCTGATGGGGCGCGGTGGGGCGTTTGCCGACCGCCCGCTGGATGTGGCGCGGCTGGCCTATGTGGG CCTTGGCACCAAGCCAGAGATCCGTGCGCAGGACTTCGATGACGGCCTGCTGGACGAGACGTTCAAAGGGCTGCGGGAGC TGATTACCCATTACCGCCAACCCCTTGTGGGGTTCCCGTCGCGCCGTTCTCCGAAGCAAACCACCTATGCGGGCGACTAT GATCATCTGGCGCGGTTGGGCGAATGGGATGAGACGATGGACGCCGTGGTGATCCCGGTTGGGGGGCGCGCCGATGGATG A
Upstream 100 bases:
>100_bases TATGCCGCTGAAGGTCGCCTGTTTGGCCTGATCCATCGGGGTCGGTGGGCCGATGTGGGCAACCCGGACGGCATTGCCCT TGCCGAAAGGATGCTGCGAG
Downstream 100 bases:
>100_bases TGCAACCCGCGCCCAGACCCGCGCTGCCGATCCCGCGACGTCGACCTGGCTGGGGGCCAATGCGGGCTCCGGCAAAACCC GCGTGTTAACGGACCGCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 986; Mature: 986
Protein sequence:
>986_residues MFDTSTTARVFATPLGVDFCAALIDGLDRALSGQGPEALARVEIHVANARMQRRLQTLYIRRGPGLLPRIRPVLSLSETA DLEGLPPAMSPLALRLELAQLIGKLIDANPDLAPRAALYDLADSLADFMGEMVEEGVTPDTIASLDMGEHSEHWTRARDF LGIAQQVIATGDRPTPEGRQAAVVDRLIAQWRINPPTHPVIVAGSTGSRRATFRLMEAVAHLPQGAVILPGIDRDMPGAI WRGLLDGRRSGLAGEDHPQYRLAKLLDAVGMDPATVPLWGRATPAVPARNAVVSLALRPAPVTNQWRTEGPKLTDVSGAM AGVTLLEAPSPQMEATAIALRMRKGVADGQRVALVTPDRRLARKVTAQLDRWRILPDDSAGQVLAQTAPGRFLRQVAEML CGPVTAEAMVALLKNPLCNSGPDRGNHLRRTVDLELQLLRKGLTFPTRAALMDWAAARKDDVDTTAWVTWLADHLLEPVE TAALPLAERVALHKSRADALAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGAMSARDYADFFTALAHDREVRFAL RPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAASADPWLNRPLRADAGLRLPDRVIGLSAHDFQQGIAGGEVWLSRA KRDDETDTVPARWLNRLVNLLGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALSVTDI ERLIRDPYAIYAARMLNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPEDAGQVFMGLAGDILAQDAPWPAARHL WRHRLQTILPWYLAQEASFRALAEPWVLEERKDWHVPGLGMTLSGIADRIDSLPDGRVAIYDYKTGNLPTDRMEIAYNKQ LLLLALMGRGGAFADRPLDVARLAYVGLGTKPEIRAQDFDDGLLDETFKGLRELITHYRQPLVGFPSRRSPKQTTYAGDY DHLARLGEWDETMDAVVIPVGGRADG
Sequences:
>Translated_986_residues MFDTSTTARVFATPLGVDFCAALIDGLDRALSGQGPEALARVEIHVANARMQRRLQTLYIRRGPGLLPRIRPVLSLSETA DLEGLPPAMSPLALRLELAQLIGKLIDANPDLAPRAALYDLADSLADFMGEMVEEGVTPDTIASLDMGEHSEHWTRARDF LGIAQQVIATGDRPTPEGRQAAVVDRLIAQWRINPPTHPVIVAGSTGSRRATFRLMEAVAHLPQGAVILPGIDRDMPGAI WRGLLDGRRSGLAGEDHPQYRLAKLLDAVGMDPATVPLWGRATPAVPARNAVVSLALRPAPVTNQWRTEGPKLTDVSGAM AGVTLLEAPSPQMEATAIALRMRKGVADGQRVALVTPDRRLARKVTAQLDRWRILPDDSAGQVLAQTAPGRFLRQVAEML CGPVTAEAMVALLKNPLCNSGPDRGNHLRRTVDLELQLLRKGLTFPTRAALMDWAAARKDDVDTTAWVTWLADHLLEPVE TAALPLAERVALHKSRADALAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGAMSARDYADFFTALAHDREVRFAL RPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAASADPWLNRPLRADAGLRLPDRVIGLSAHDFQQGIAGGEVWLSRA KRDDETDTVPARWLNRLVNLLGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALSVTDI ERLIRDPYAIYAARMLNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPEDAGQVFMGLAGDILAQDAPWPAARHL WRHRLQTILPWYLAQEASFRALAEPWVLEERKDWHVPGLGMTLSGIADRIDSLPDGRVAIYDYKTGNLPTDRMEIAYNKQ LLLLALMGRGGAFADRPLDVARLAYVGLGTKPEIRAQDFDDGLLDETFKGLRELITHYRQPLVGFPSRRSPKQTTYAGDY DHLARLGEWDETMDAVVIPVGGRADG >Mature_986_residues MFDTSTTARVFATPLGVDFCAALIDGLDRALSGQGPEALARVEIHVANARMQRRLQTLYIRRGPGLLPRIRPVLSLSETA DLEGLPPAMSPLALRLELAQLIGKLIDANPDLAPRAALYDLADSLADFMGEMVEEGVTPDTIASLDMGEHSEHWTRARDF LGIAQQVIATGDRPTPEGRQAAVVDRLIAQWRINPPTHPVIVAGSTGSRRATFRLMEAVAHLPQGAVILPGIDRDMPGAI WRGLLDGRRSGLAGEDHPQYRLAKLLDAVGMDPATVPLWGRATPAVPARNAVVSLALRPAPVTNQWRTEGPKLTDVSGAM AGVTLLEAPSPQMEATAIALRMRKGVADGQRVALVTPDRRLARKVTAQLDRWRILPDDSAGQVLAQTAPGRFLRQVAEML CGPVTAEAMVALLKNPLCNSGPDRGNHLRRTVDLELQLLRKGLTFPTRAALMDWAAARKDDVDTTAWVTWLADHLLEPVE TAALPLAERVALHKSRADALAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGAMSARDYADFFTALAHDREVRFAL RPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAASADPWLNRPLRADAGLRLPDRVIGLSAHDFQQGIAGGEVWLSRA KRDDETDTVPARWLNRLVNLLGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALSVTDI ERLIRDPYAIYAARMLNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPEDAGQVFMGLAGDILAQDAPWPAARHL WRHRLQTILPWYLAQEASFRALAEPWVLEERKDWHVPGLGMTLSGIADRIDSLPDGRVAIYDYKTGNLPTDRMEIAYNKQ LLLLALMGRGGAFADRPLDVARLAYVGLGTKPEIRAQDFDDGLLDETFKGLRELITHYRQPLVGFPSRRSPKQTTYAGDY DHLARLGEWDETMDAVVIPVGGRADG
Specific function: Unknown
COG id: COG3893
COG function: function code L; Inactivated superfamily I helicase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011335 - InterPro: IPR022436 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 107689; Mature: 107689
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDTSTTARVFATPLGVDFCAALIDGLDRALSGQGPEALARVEIHVANARMQRRLQTLYI CCCCCCCHHHEECCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEHHHHHHHHHHHHHH RRGPGLLPRIRPVLSLSETADLEGLPPAMSPLALRLELAQLIGKLIDANPDLAPRAALYD CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH LADSLADFMGEMVEEGVTPDTIASLDMGEHSEHWTRARDFLGIAQQVIATGDRPTPEGRQ HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH AAVVDRLIAQWRINPPTHPVIVAGSTGSRRATFRLMEAVAHLPQGAVILPGIDRDMPGAI HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHH WRGLLDGRRSGLAGEDHPQYRLAKLLDAVGMDPATVPLWGRATPAVPARNAVVSLALRPA HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC PVTNQWRTEGPKLTDVSGAMAGVTLLEAPSPQMEATAIALRMRKGVADGQRVALVTPDRR CCCCCHHCCCCCEECCCHHHHCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHH LARKVTAQLDRWRILPDDSAGQVLAQTAPGRFLRQVAEMLCGPVTAEAMVALLKNPLCNS HHHHHHHHHHHEEECCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC GPDRGNHLRRTVDLELQLLRKGLTFPTRAALMDWAAARKDDVDTTAWVTWLADHLLEPVE CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH TAALPLAERVALHKSRADALAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGAMSA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCH RDYADFFTALAHDREVRFALRPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAASADP HHHHHHHHHHHCCCCEEEEECCCCCEEEECCHHHEECCCCEEEEEECCCCCCCCCCCCCH WLNRPLRADAGLRLPDRVIGLSAHDFQQGIAGGEVWLSRAKRDDETDTVPARWLNRLVNL HHCCCCCCCCCCCCCHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALSVTDI HCCCCCCHHHHHHHHHHCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ERLIRDPYAIYAARMLNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPEDAGQVF HHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH MGLAGDILAQDAPWPAARHLWRHRLQTILPWYLAQEASFRALAEPWVLEERKDWHVPGLG HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCCCCCCCC MTLSGIADRIDSLPDGRVAIYDYKTGNLPTDRMEIAYNKQLLLLALMGRGGAFADRPLDV CHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCHHH ARLAYVGLGTKPEIRAQDFDDGLLDETFKGLRELITHYRQPLVGFPSRRSPKQTTYAGDY HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH DHLARLGEWDETMDAVVIPVGGRADG HHHHHHCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure MFDTSTTARVFATPLGVDFCAALIDGLDRALSGQGPEALARVEIHVANARMQRRLQTLYI CCCCCCCHHHEECCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEHHHHHHHHHHHHHH RRGPGLLPRIRPVLSLSETADLEGLPPAMSPLALRLELAQLIGKLIDANPDLAPRAALYD CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH LADSLADFMGEMVEEGVTPDTIASLDMGEHSEHWTRARDFLGIAQQVIATGDRPTPEGRQ HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH AAVVDRLIAQWRINPPTHPVIVAGSTGSRRATFRLMEAVAHLPQGAVILPGIDRDMPGAI HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHH WRGLLDGRRSGLAGEDHPQYRLAKLLDAVGMDPATVPLWGRATPAVPARNAVVSLALRPA HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC PVTNQWRTEGPKLTDVSGAMAGVTLLEAPSPQMEATAIALRMRKGVADGQRVALVTPDRR CCCCCHHCCCCCEECCCHHHHCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHH LARKVTAQLDRWRILPDDSAGQVLAQTAPGRFLRQVAEMLCGPVTAEAMVALLKNPLCNS HHHHHHHHHHHEEECCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC GPDRGNHLRRTVDLELQLLRKGLTFPTRAALMDWAAARKDDVDTTAWVTWLADHLLEPVE CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH TAALPLAERVALHKSRADALAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGAMSA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCH RDYADFFTALAHDREVRFALRPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAASADP HHHHHHHHHHHCCCCEEEEECCCCCEEEECCHHHEECCCCEEEEEECCCCCCCCCCCCCH WLNRPLRADAGLRLPDRVIGLSAHDFQQGIAGGEVWLSRAKRDDETDTVPARWLNRLVNL HHCCCCCCCCCCCCCHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALSVTDI HCCCCCCHHHHHHHHHHCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ERLIRDPYAIYAARMLNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPEDAGQVF HHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH MGLAGDILAQDAPWPAARHLWRHRLQTILPWYLAQEASFRALAEPWVLEERKDWHVPGLG HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCCCCCCCC MTLSGIADRIDSLPDGRVAIYDYKTGNLPTDRMEIAYNKQLLLLALMGRGGAFADRPLDV CHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCHHH ARLAYVGLGTKPEIRAQDFDDGLLDETFKGLRELITHYRQPLVGFPSRRSPKQTTYAGDY HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH DHLARLGEWDETMDAVVIPVGGRADG HHHHHHCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA