| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056555
Identifier: 89056555
GI number: 89056555
Start: 4169061
End: 4169741
Strand: Direct
Name: 89056555
Synonym: Jann_4064
Alternate gene names: NA
Gene position: 4169061-4169741 (Clockwise)
Preceding gene: 89056554
Following gene: 89056556
Centisome position: 96.55
GC content: 65.49
Gene sequence:
>681_bases ATGACCCTGCCCTGCCTGATCCTTGCGGCTGGGTTCGGCACGCGCATGGGGGCCCTGACGGCAGATCGCCCCAAGCCGCT GATAGACGTCGCCAACCGCCTCCTGCTGGATCACGCGCTGGACGCCGCCCGGGGGACCGGGCCGATCACCGTGAACGCCC ATTGCCACGCCGACCAGATCGCCGCGCATCTGGCCGGGACGTCGCTGCGTCTTCAGTACGAGTACCCCGATATCCTGGAT TCCGGCGGTGCGGTGAAACGGGCCGCCCAAAGCCTGCCGACCGGGCCCATCGCCACGCTCAACGCCGATAATGTCTGGAC CGGAGAGGCCCCCATCACGCAGCTTAGCGCCGCCTTTGATCCTGCGAGAATGGGGGCGCTCCTCCTCCTTGTGCCGCGCG CGGACGCTGTCGGGCGCATCGGTGTTGGCGATTTCAGCATGGATGCAGAGGGGCGGCTGACCCTCGATAAATTGCCCGAA AGCTACGTCTATACCGGCGCGCAGATCCTTGACCCCACGCCGTGCCTCAATGATCCGCGCGATGTGTTTACCCTGCGCGA TATGTGGCACGCCTATGCCGCTGAAGGTCGCCTGTTTGGCCTGATCCATCGGGGTCGGTGGGCCGATGTGGGCAACCCGG ACGGCATTGCCCTTGCCGAAAGGATGCTGCGAGATGTTTGA
Upstream 100 bases:
>100_bases CACGCACCCGCACCTTAATTGCACGGGCCGCGTCAGACCTGCCACCCATGCTGGCCCCCGTCACCGAGCTACTCGATCGG ACTGCCCATTGGACCGCCCC
Downstream 100 bases:
>100_bases CACGTCCACCACCGCGCGCGTCTTCGCCACGCCTTTGGGTGTCGACTTTTGCGCCGCGCTCATCGACGGGCTTGATCGGG CGCTGAGCGGCCAAGGCCCC
Product: nucleotidyl transferase
Products: NA
Alternate protein names: Nucleotidyltransferase Family Protein; Nucleotidyl Transferase Superfamily; Nucleotidyl Transferase Family Protein; Nucleotidyltransferase Protein; Mannose-1-Phosphate Guanylyltransferase; Mannose-1-Phosphate Guanyltransferase; Nucleotidyl Transferase Protein; Nucleotidyltransferase
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MTLPCLILAAGFGTRMGALTADRPKPLIDVANRLLLDHALDAARGTGPITVNAHCHADQIAAHLAGTSLRLQYEYPDILD SGGAVKRAAQSLPTGPIATLNADNVWTGEAPITQLSAAFDPARMGALLLLVPRADAVGRIGVGDFSMDAEGRLTLDKLPE SYVYTGAQILDPTPCLNDPRDVFTLRDMWHAYAAEGRLFGLIHRGRWADVGNPDGIALAERMLRDV
Sequences:
>Translated_226_residues MTLPCLILAAGFGTRMGALTADRPKPLIDVANRLLLDHALDAARGTGPITVNAHCHADQIAAHLAGTSLRLQYEYPDILD SGGAVKRAAQSLPTGPIATLNADNVWTGEAPITQLSAAFDPARMGALLLLVPRADAVGRIGVGDFSMDAEGRLTLDKLPE SYVYTGAQILDPTPCLNDPRDVFTLRDMWHAYAAEGRLFGLIHRGRWADVGNPDGIALAERMLRDV >Mature_225_residues TLPCLILAAGFGTRMGALTADRPKPLIDVANRLLLDHALDAARGTGPITVNAHCHADQIAAHLAGTSLRLQYEYPDILDS GGAVKRAAQSLPTGPIATLNADNVWTGEAPITQLSAAFDPARMGALLLLVPRADAVGRIGVGDFSMDAEGRLTLDKLPES YVYTGAQILDPTPCLNDPRDVFTLRDMWHAYAAEGRLFGLIHRGRWADVGNPDGIALAERMLRDV
Specific function: Unknown
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24158; Mature: 24027
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPCLILAAGFGTRMGALTADRPKPLIDVANRLLLDHALDAARGTGPITVNAHCHADQI CCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH AAHLAGTSLRLQYEYPDILDSGGAVKRAAQSLPTGPIATLNADNVWTGEAPITQLSAAFD HHHHCCCEEEEEECCCHHHCCCCHHHHHHHHCCCCCEEEECCCCEECCCCCHHHHHHHCC PARMGALLLLVPRADAVGRIGVGDFSMDAEGRLTLDKLPESYVYTGAQILDPTPCLNDPR HHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHCCCCCEECCCEEECCCCCCCCCH DVFTLRDMWHAYAAEGRLFGLIHRGRWADVGNPDGIALAERMLRDV HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TLPCLILAAGFGTRMGALTADRPKPLIDVANRLLLDHALDAARGTGPITVNAHCHADQI CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH AAHLAGTSLRLQYEYPDILDSGGAVKRAAQSLPTGPIATLNADNVWTGEAPITQLSAAFD HHHHCCCEEEEEECCCHHHCCCCHHHHHHHHCCCCCEEEECCCCEECCCCCHHHHHHHCC PARMGALLLLVPRADAVGRIGVGDFSMDAEGRLTLDKLPESYVYTGAQILDPTPCLNDPR HHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHCCCCCEECCCEEECCCCCCCCCH DVFTLRDMWHAYAAEGRLFGLIHRGRWADVGNPDGIALAERMLRDV HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA