Click here to switch to the map view.

The map label for this gene is rmuC [H]

Identifier: 89056539

GI number: 89056539

Start: 4152626

End: 4153789

Strand: Direct

Name: rmuC [H]

Synonym: Jann_4048

Alternate gene names: 89056539

Gene position: 4152626-4153789 (Clockwise)

Preceding gene: 89056538

Following gene: 89056542

Centisome position: 96.17

GC content: 64.86

Gene sequence:

>1164_bases
GTGATACAGGTCGATGAGATCGTGGTGGATCTGAGCGATCCGATGACGCTGGCCGCCATAGCGGCGGGCGTTGTGTTTGT
TGTGCTGATTGTCCTTGCTCTGCAAGCCTCCCGCGCCGCAAGACGGTCAGCCCGCGTGATGGAGCCGTTGGCGCAGCATA
TGGCATCGCTTGGCCAGACGGTGCAGGCGCTAGGCCAGGGGCAGGAGCGGTTGGCCGGTGGGTTAGCGTCCGTGTCGGAT
CATCAGGCACGCGCGCAGGCGAGCCTGCAGGAGGCGATGGAGCGGCGGCTGGAGGAGGTGCAGAAAGGCATGTCCGAGAC
GCTGCGTGGGACATCGACCCGCACGGCCCGCAGCCTTGGGGAGTTGCAGCAGAAGCTAGAGCAGATCGACCGCGCCCAGG
CGAAGATCGAGAAGTTGTCGGGCGATGTGTTGGGGTTGCAGGACATCCTGTCAAACAAGCAGCGGCGGGGGATGTTCGGG
GAAATCCAGCTCAACGATATCGTGTCCGGTGCGCTGCCGCCCGACGCCTATGGGTTTCAAGCGACACTCTCGAACGGAAA
GCGCGCCGACGTGCTGGTGCGGCTGCCAAACCCGCCCGGCCCCATCGTCATCGACGCCAAGTTCCCCCTGGAGGCCTATG
AGGCGCTGATGAACGCGCAGGGCCCGGAGGATCAGCTGCGCGCCCTGAAAGCCCTGGGCGCGGCGGTGCGGGTGCACATC
AAGGCGATCTCGGAAAAATACATCATCGAGGGGGAAACGGCGGACGGCGCGCTGATGTTCCTGCCGTCGGAGGCGGTTTA
TGCGGAGCTGCACGCGCGATTGCCGGAGGTCGTGCGGGACGGCTTCGATGCGCGGGTCTGGATCGTGTCGCCCACGACCT
GCATGGCCACGCTCAACACCATGCGCGCGGTGATGAAGGACGCAAGGATGCGCGAACAGGCCGGAGAGATCCGCAAAGCG
CTGCGGCAGTTACACAGGGATGTGGAGATTGTCGGAGAGCGGGCGGGCAAGCTGGAGGCGCATCTGCGGATGGCCGGTGA
AGACGTGGCGGGGATCCTGACGGCATCGGTGCGGGCAGGAAAGCGGGCGGAGCGGTTGGACAATTTCGACTTTGAGGAAA
TCGCGCCAGAGGGTGCGGAGATCGTGCCGTTACCGAGGGGGTAA

Upstream 100 bases:

>100_bases
GCGAGATGGAGGCCACGCCGCTGTCGGGCCAATGCAACCACGGGCGGCCCACCTATGTGGAGCTGAAACTGGCCGATATC
GAACGGCTGTTCGGGCGCAC

Downstream 100 bases:

>100_bases
CGCGACTAGATCCGGGCGAAGGTGGCGCGCAGGATCGACTCAAGCGCCGTCGCGTCGTCTTGGGTGAAGGCATCGGGCTG
ATTGCTGTCGATATCCAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MIQVDEIVVDLSDPMTLAAIAAGVVFVVLIVLALQASRAARRSARVMEPLAQHMASLGQTVQALGQGQERLAGGLASVSD
HQARAQASLQEAMERRLEEVQKGMSETLRGTSTRTARSLGELQQKLEQIDRAQAKIEKLSGDVLGLQDILSNKQRRGMFG
EIQLNDIVSGALPPDAYGFQATLSNGKRADVLVRLPNPPGPIVIDAKFPLEAYEALMNAQGPEDQLRALKALGAAVRVHI
KAISEKYIIEGETADGALMFLPSEAVYAELHARLPEVVRDGFDARVWIVSPTTCMATLNTMRAVMKDARMREQAGEIRKA
LRQLHRDVEIVGERAGKLEAHLRMAGEDVAGILTASVRAGKRAERLDNFDFEEIAPEGAEIVPLPRG

Sequences:

>Translated_387_residues
MIQVDEIVVDLSDPMTLAAIAAGVVFVVLIVLALQASRAARRSARVMEPLAQHMASLGQTVQALGQGQERLAGGLASVSD
HQARAQASLQEAMERRLEEVQKGMSETLRGTSTRTARSLGELQQKLEQIDRAQAKIEKLSGDVLGLQDILSNKQRRGMFG
EIQLNDIVSGALPPDAYGFQATLSNGKRADVLVRLPNPPGPIVIDAKFPLEAYEALMNAQGPEDQLRALKALGAAVRVHI
KAISEKYIIEGETADGALMFLPSEAVYAELHARLPEVVRDGFDARVWIVSPTTCMATLNTMRAVMKDARMREQAGEIRKA
LRQLHRDVEIVGERAGKLEAHLRMAGEDVAGILTASVRAGKRAERLDNFDFEEIAPEGAEIVPLPRG
>Mature_387_residues
MIQVDEIVVDLSDPMTLAAIAAGVVFVVLIVLALQASRAARRSARVMEPLAQHMASLGQTVQALGQGQERLAGGLASVSD
HQARAQASLQEAMERRLEEVQKGMSETLRGTSTRTARSLGELQQKLEQIDRAQAKIEKLSGDVLGLQDILSNKQRRGMFG
EIQLNDIVSGALPPDAYGFQATLSNGKRADVLVRLPNPPGPIVIDAKFPLEAYEALMNAQGPEDQLRALKALGAAVRVHI
KAISEKYIIEGETADGALMFLPSEAVYAELHARLPEVVRDGFDARVWIVSPTTCMATLNTMRAVMKDARMREQAGEIRKA
LRQLHRDVEIVGERAGKLEAHLRMAGEDVAGILTASVRAGKRAERLDNFDFEEIAPEGAEIVPLPRG

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=255, Percent_Identity=29.0196078431373, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 42014; Mature: 42014

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQVDEIVVDLSDPMTLAAIAAGVVFVVLIVLALQASRAARRSARVMEPLAQHMASLGQT
CCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQALGQGQERLAGGLASVSDHQARAQASLQEAMERRLEEVQKGMSETLRGTSTRTARSLG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ELQQKLEQIDRAQAKIEKLSGDVLGLQDILSNKQRRGMFGEIQLNDIVSGALPPDAYGFQ
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCCEEEHHHHHCCCCCCCCCCCH
ATLSNGKRADVLVRLPNPPGPIVIDAKFPLEAYEALMNAQGPEDQLRALKALGAAVRVHI
HHHCCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KAISEKYIIEGETADGALMFLPSEAVYAELHARLPEVVRDGFDARVWIVSPTTCMATLNT
HHHCCHHEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
MRAVMKDARMREQAGEIRKALRQLHRDVEIVGERAGKLEAHLRMAGEDVAGILTASVRAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
KRAERLDNFDFEEIAPEGAEIVPLPRG
HHHHHHCCCCHHHHCCCCCEEECCCCC
>Mature Secondary Structure
MIQVDEIVVDLSDPMTLAAIAAGVVFVVLIVLALQASRAARRSARVMEPLAQHMASLGQT
CCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQALGQGQERLAGGLASVSDHQARAQASLQEAMERRLEEVQKGMSETLRGTSTRTARSLG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ELQQKLEQIDRAQAKIEKLSGDVLGLQDILSNKQRRGMFGEIQLNDIVSGALPPDAYGFQ
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCCEEEHHHHHCCCCCCCCCCCH
ATLSNGKRADVLVRLPNPPGPIVIDAKFPLEAYEALMNAQGPEDQLRALKALGAAVRVHI
HHHCCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KAISEKYIIEGETADGALMFLPSEAVYAELHARLPEVVRDGFDARVWIVSPTTCMATLNT
HHHCCHHEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
MRAVMKDARMREQAGEIRKALRQLHRDVEIVGERAGKLEAHLRMAGEDVAGILTASVRAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
KRAERLDNFDFEEIAPEGAEIVPLPRG
HHHHHHCCCCHHHHCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]