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The map label for this gene is yiaD [H]

Identifier: 89056405

GI number: 89056405

Start: 4010986

End: 4012962

Strand: Direct

Name: yiaD [H]

Synonym: Jann_3914

Alternate gene names: 89056405

Gene position: 4010986-4012962 (Clockwise)

Preceding gene: 89056404

Following gene: 89056406

Centisome position: 92.89

GC content: 65.15

Gene sequence:

>1977_bases
ATGATAGTTCCCAGTCCGAACAAAGACCGCATATCCGCATTGGTCGGGCCTGCCTGCTTCGTGGTGGCGGGCGGACTGGC
TGTGGCGACGGCCATCGTGGCCGCTCTCGCGATTGAGCGGCGCTCCACTGAAGACATCCTGACCGCGCTGGAAGCCGACG
GCATTCAATGGGTCGATGTTTCGGCCAATGGCCTTCAGGTGTTCTTGGATGGCACAGCGCCGGATGAGGCGTTGCGCTTC
CGCGCTCAGACCGGTGCCAGCGCCATTGTGGATTCCGACCGGGTGATCAACCGACTGGATGTGGCCGCGCTTGGCACGGC
GGCCCCGCCGCGCTTCTCCCTCGACATGCTGCGCAATGGCGATGGCATCCAGCTGATCGGCCTGATCCCCGGCCCCGAAG
GCGATGAAGCCTTCGCCGTGGCCGAGACCATCGCTGATATTGCCGGATCGGCCGACGTCGTGAATATGGTGGAGATGGCG
GACCTTGAAGCCCCGGAGAATTGGGACGAGGCGCTCGCCTACGGGTTGCGTGCGCTGGCGGCTCTGCCTCGGTCCAAGGT
GACCGTTCTGGCAAACAGGGTCGAGGTTGAAGCGGTTGGCGAAACCCGCGAGGAACGCGCCGAATTCATCGCGCGATTGC
AACAGAACCAACCGGCCGGGGTCGAGATTGTTCTCGACATATCTGCCCCCCGCCCGGTGATCACGCCCTTCTCTCTGCGG
TTTGTGCGCGACGACAGCGGCGCGCGGTTTGAAACCTGTACCGCCGACACCCAAGCTGCCCATGACCAGATCGTGGCGGC
TGGCCAAGCTGCTGGCACCACCGGCAACACACCCTGCACCATCGGTCTTGGCGTGCCGTCCCCAAGCTGGGGCAACGCGG
TCGCCACATCACTGGAAGCCCTGACGGAACTGGGCAACGGCAGTGTGACGCTGTCTGATGCTGATGTGACCCTGATCGCC
GCCCAAGGCACCTCTCAGGAGCTGTTCGATACGGTTGTGGGCGAATTGGACGCGGACTTGCCCGCCGTCTTCTCGCTCCA
GGCGATCCTGCCAGAACCGGAGCTTGAGGCCGCAGCCGCCGGCCCCGCGCGGTTCACTGCCACCTTTGACCAAGCCCAGG
GCGTGCGCCTGCGCGGGCGGCTGCCGGGCGGCGCGATTGGCCAATCCGTGCAGGCCTTTGCCGCGGCCACCTTCGGGGCG
GGCACGACGGACATTGCAACGCGTGAAGTCGCCGATCTGCCGCAAGGCTGGTCGATCCGCGTCATGGCGGGCCTCACGGC
CTTGTCGCAACTGGAAGATGGCGTCCTGACGATTGAGCCCGATACCCTGCGCCTGTCGGGCCGAACGGGCGACAGCGAGT
TGATCTCTGCCCTTACCCGCCAGATCGCCGAAGATCTGGGCCCGGGTGCCATTTTCGACATGAATGTGGCCTATGATGAG
GCGCTGGATCCCGTCGCATCCCAACCCACCCCTCAGGAATGTGAAGCGCGCATTCGCGACATCCAGGACGAGACGAAGAT
TACCTTCGACCCCGGCTCGACCGAGATCAACCGCGCGGCCGGCGAGGTGCTGGACGAGATCGCCGAGATTTTGCCCGATT
GCATGCATGTGAGCATGGAGATCGGGGGGCATACCGATGCCCAGGGCGGGGAGACCATGAACCTCAACCTCAGCCAGTCC
CGCGCCAATGCGGTCCTGAACGGCCTTCTGGCCCGCGGCGTGCTGGTCAGCAACCTTGCCGCCCAAGGCTATGGCGAAAG
CCAGCCCATTGCCGACAACGAGACGGAAGACGGGCGCGAACAGAACCGTCGCATCGAGTTCCGCCTGCTTGCCGACGCCG
AAGTCGCGGGTCTGGCCGCCGACGTCGATGACCAGCCACGCACCCGCGCAGGCATTCTGGCGGAGGGCGCAATTGCCGAT
TGGCCGTTTGAGCTGCGGCCCCTTCCCCGCCCGGAGCCGCCCATCGATGACGAGTAA

Upstream 100 bases:

>100_bases
TCGCCGTCGCCGCACTCGTTTGATTGAAAGCGTCTGCGGGACGGGTTACTGAGCTACCATATATAGGCCCCCGAGCAGGG
ATTTTGCGTAACATCGCCCC

Downstream 100 bases:

>100_bases
CTCAAATTCAGGGCGCGTGTTGCCCGCCCAACAGAAAGCGAAGGCCCCATGAACCGGCTGGAATTCATCATTGCCATCGC
GATTATCCTGTTCGTGGCCT

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MIVPSPNKDRISALVGPACFVVAGGLAVATAIVAALAIERRSTEDILTALEADGIQWVDVSANGLQVFLDGTAPDEALRF
RAQTGASAIVDSDRVINRLDVAALGTAAPPRFSLDMLRNGDGIQLIGLIPGPEGDEAFAVAETIADIAGSADVVNMVEMA
DLEAPENWDEALAYGLRALAALPRSKVTVLANRVEVEAVGETREERAEFIARLQQNQPAGVEIVLDISAPRPVITPFSLR
FVRDDSGARFETCTADTQAAHDQIVAAGQAAGTTGNTPCTIGLGVPSPSWGNAVATSLEALTELGNGSVTLSDADVTLIA
AQGTSQELFDTVVGELDADLPAVFSLQAILPEPELEAAAAGPARFTATFDQAQGVRLRGRLPGGAIGQSVQAFAAATFGA
GTTDIATREVADLPQGWSIRVMAGLTALSQLEDGVLTIEPDTLRLSGRTGDSELISALTRQIAEDLGPGAIFDMNVAYDE
ALDPVASQPTPQECEARIRDIQDETKITFDPGSTEINRAAGEVLDEIAEILPDCMHVSMEIGGHTDAQGGETMNLNLSQS
RANAVLNGLLARGVLVSNLAAQGYGESQPIADNETEDGREQNRRIEFRLLADAEVAGLAADVDDQPRTRAGILAEGAIAD
WPFELRPLPRPEPPIDDE

Sequences:

>Translated_658_residues
MIVPSPNKDRISALVGPACFVVAGGLAVATAIVAALAIERRSTEDILTALEADGIQWVDVSANGLQVFLDGTAPDEALRF
RAQTGASAIVDSDRVINRLDVAALGTAAPPRFSLDMLRNGDGIQLIGLIPGPEGDEAFAVAETIADIAGSADVVNMVEMA
DLEAPENWDEALAYGLRALAALPRSKVTVLANRVEVEAVGETREERAEFIARLQQNQPAGVEIVLDISAPRPVITPFSLR
FVRDDSGARFETCTADTQAAHDQIVAAGQAAGTTGNTPCTIGLGVPSPSWGNAVATSLEALTELGNGSVTLSDADVTLIA
AQGTSQELFDTVVGELDADLPAVFSLQAILPEPELEAAAAGPARFTATFDQAQGVRLRGRLPGGAIGQSVQAFAAATFGA
GTTDIATREVADLPQGWSIRVMAGLTALSQLEDGVLTIEPDTLRLSGRTGDSELISALTRQIAEDLGPGAIFDMNVAYDE
ALDPVASQPTPQECEARIRDIQDETKITFDPGSTEINRAAGEVLDEIAEILPDCMHVSMEIGGHTDAQGGETMNLNLSQS
RANAVLNGLLARGVLVSNLAAQGYGESQPIADNETEDGREQNRRIEFRLLADAEVAGLAADVDDQPRTRAGILAEGAIAD
WPFELRPLPRPEPPIDDE
>Mature_658_residues
MIVPSPNKDRISALVGPACFVVAGGLAVATAIVAALAIERRSTEDILTALEADGIQWVDVSANGLQVFLDGTAPDEALRF
RAQTGASAIVDSDRVINRLDVAALGTAAPPRFSLDMLRNGDGIQLIGLIPGPEGDEAFAVAETIADIAGSADVVNMVEMA
DLEAPENWDEALAYGLRALAALPRSKVTVLANRVEVEAVGETREERAEFIARLQQNQPAGVEIVLDISAPRPVITPFSLR
FVRDDSGARFETCTADTQAAHDQIVAAGQAAGTTGNTPCTIGLGVPSPSWGNAVATSLEALTELGNGSVTLSDADVTLIA
AQGTSQELFDTVVGELDADLPAVFSLQAILPEPELEAAAAGPARFTATFDQAQGVRLRGRLPGGAIGQSVQAFAAATFGA
GTTDIATREVADLPQGWSIRVMAGLTALSQLEDGVLTIEPDTLRLSGRTGDSELISALTRQIAEDLGPGAIFDMNVAYDE
ALDPVASQPTPQECEARIRDIQDETKITFDPGSTEINRAAGEVLDEIAEILPDCMHVSMEIGGHTDAQGGETMNLNLSQS
RANAVLNGLLARGVLVSNLAAQGYGESQPIADNETEDGREQNRRIEFRLLADAEVAGLAADVDDQPRTRAGILAEGAIAD
WPFELRPLPRPEPPIDDE

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=103, Percent_Identity=37.8640776699029, Blast_Score=81, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 68982; Mature: 68982

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVPSPNKDRISALVGPACFVVAGGLAVATAIVAALAIERRSTEDILTALEADGIQWVDV
CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEE
SANGLQVFLDGTAPDEALRFRAQTGASAIVDSDRVINRLDVAALGTAAPPRFSLDMLRNG
CCCCEEEEECCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCC
DGIQLIGLIPGPEGDEAFAVAETIADIAGSADVVNMVEMADLEAPENWDEALAYGLRALA
CCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ALPRSKVTVLANRVEVEAVGETREERAEFIARLQQNQPAGVEIVLDISAPRPVITPFSLR
HCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEE
FVRDDSGARFETCTADTQAAHDQIVAAGQAAGTTGNTPCTIGLGVPSPSWGNAVATSLEA
EEECCCCCEEEEECCCHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
LTELGNGSVTLSDADVTLIAAQGTSQELFDTVVGELDADLPAVFSLQAILPEPELEAAAA
HHHCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHCCC
GPARFTATFDQAQGVRLRGRLPGGAIGQSVQAFAAATFGAGTTDIATREVADLPQGWSIR
CCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEE
VMAGLTALSQLEDGVLTIEPDTLRLSGRTGDSELISALTRQIAEDLGPGAIFDMNVAYDE
EHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHH
ALDPVASQPTPQECEARIRDIQDETKITFDPGSTEINRAAGEVLDEIAEILPDCMHVSME
HCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
IGGHTDAQGGETMNLNLSQSRANAVLNGLLARGVLVSNLAAQGYGESQPIADNETEDGRE
ECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
QNRRIEFRLLADAEVAGLAADVDDQPRTRAGILAEGAIADWPFELRPLPRPEPPIDDE
HCCEEEEEEEECCCHHCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIVPSPNKDRISALVGPACFVVAGGLAVATAIVAALAIERRSTEDILTALEADGIQWVDV
CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEE
SANGLQVFLDGTAPDEALRFRAQTGASAIVDSDRVINRLDVAALGTAAPPRFSLDMLRNG
CCCCEEEEECCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCC
DGIQLIGLIPGPEGDEAFAVAETIADIAGSADVVNMVEMADLEAPENWDEALAYGLRALA
CCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ALPRSKVTVLANRVEVEAVGETREERAEFIARLQQNQPAGVEIVLDISAPRPVITPFSLR
HCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEE
FVRDDSGARFETCTADTQAAHDQIVAAGQAAGTTGNTPCTIGLGVPSPSWGNAVATSLEA
EEECCCCCEEEEECCCHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
LTELGNGSVTLSDADVTLIAAQGTSQELFDTVVGELDADLPAVFSLQAILPEPELEAAAA
HHHCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHCCC
GPARFTATFDQAQGVRLRGRLPGGAIGQSVQAFAAATFGAGTTDIATREVADLPQGWSIR
CCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEE
VMAGLTALSQLEDGVLTIEPDTLRLSGRTGDSELISALTRQIAEDLGPGAIFDMNVAYDE
EHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHH
ALDPVASQPTPQECEARIRDIQDETKITFDPGSTEINRAAGEVLDEIAEILPDCMHVSME
HCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
IGGHTDAQGGETMNLNLSQSRANAVLNGLLARGVLVSNLAAQGYGESQPIADNETEDGRE
ECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
QNRRIEFRLLADAEVAGLAADVDDQPRTRAGILAEGAIADWPFELRPLPRPEPPIDDE
HCCEEEEEEEECCCHHCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]