Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89056366

Identifier: 89056366

GI number: 89056366

Start: 3974363

End: 3974767

Strand: Direct

Name: 89056366

Synonym: Jann_3875

Alternate gene names: NA

Gene position: 3974363-3974767 (Clockwise)

Preceding gene: 89056363

Following gene: 89056367

Centisome position: 92.04

GC content: 60.25

Gene sequence:

>405_bases
ATGCTCGACATCCCCTTTTTCGCAGCTAGGCTAGATCGCATGGGCAGCGACAAGAACGAAATGGCCAAGGACCGCACGGA
TTGGGCAGAGGATCGCACGATCCTGGCCAACGAGCGGACTTTTGCGGGCTGGATGCGCACCGGGATGGCCGCCGTCGCCA
TAGCCCTTGGCCTGAAAGCGGTTTTTGGTGAGTTTGAGCCGACATGGGCCGCGAAGGCGACCTCCAGCGTGTTCATCGTA
TTGGCCTGCTACATATTCTACGCCGCCCGCCAACAGGCCTGCGCCACGCAACAGCGGATGGAACAGCACGACGCAACGGC
CAAATCTACCGGCTCGATGACGGCAACGGCAATCATCCTGGCCATCGGCTCCATTCTGACCGGCGCGATTCTTTGGCTGC
TGTAA

Upstream 100 bases:

>100_bases
CTTTCCGCGGATCTGGTCGCTGCCCCTAGCAGCAATCTCAGTTTACGAAGTAGCGCCGATCCTTTCAAGTGCAAGTAGTG
TATACAAGTATTCTGATACG

Downstream 100 bases:

>100_bases
TCCGGTGGACGGCGCGGGGGCAGAGGCCTAGTTTGACCTCGGCAATTGCGTGAGGCGACATGACCGAGACCCCTGATACT
GGCTACCAAGTCCTTGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MLDIPFFAARLDRMGSDKNEMAKDRTDWAEDRTILANERTFAGWMRTGMAAVAIALGLKAVFGEFEPTWAAKATSSVFIV
LACYIFYAARQQACATQQRMEQHDATAKSTGSMTATAIILAIGSILTGAILWLL

Sequences:

>Translated_134_residues
MLDIPFFAARLDRMGSDKNEMAKDRTDWAEDRTILANERTFAGWMRTGMAAVAIALGLKAVFGEFEPTWAAKATSSVFIV
LACYIFYAARQQACATQQRMEQHDATAKSTGSMTATAIILAIGSILTGAILWLL
>Mature_134_residues
MLDIPFFAARLDRMGSDKNEMAKDRTDWAEDRTILANERTFAGWMRTGMAAVAIALGLKAVFGEFEPTWAAKATSSVFIV
LACYIFYAARQQACATQQRMEQHDATAKSTGSMTATAIILAIGSILTGAILWLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14657; Mature: 14657

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDIPFFAARLDRMGSDKNEMAKDRTDWAEDRTILANERTFAGWMRTGMAAVAIALGLKA
CCCCHHHHHHHHHCCCCHHHHHHHHCCHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
VFGEFEPTWAAKATSSVFIVLACYIFYAARQQACATQQRMEQHDATAKSTGSMTATAIIL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AIGSILTGAILWLL
HHHHHHHHHHHHHC
>Mature Secondary Structure
MLDIPFFAARLDRMGSDKNEMAKDRTDWAEDRTILANERTFAGWMRTGMAAVAIALGLKA
CCCCHHHHHHHHHCCCCHHHHHHHHCCHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
VFGEFEPTWAAKATSSVFIVLACYIFYAARQQACATQQRMEQHDATAKSTGSMTATAIIL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AIGSILTGAILWLL
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA