| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is gsiC [H]
Identifier: 89056308
GI number: 89056308
Start: 3907401
End: 3908357
Strand: Direct
Name: gsiC [H]
Synonym: Jann_3817
Alternate gene names: 89056308
Gene position: 3907401-3908357 (Clockwise)
Preceding gene: 89056307
Following gene: 89056309
Centisome position: 90.49
GC content: 61.86
Gene sequence:
>957_bases ATGTCACATATCTGGATAATGATCGCGCAGCGGCTGGCTCTTGGCCTTGTCACTCTGTTCGTGGTGTCATTGATCATCTT CCTCGGCACCGAGCTTCTGCCCGGTGACTTCGCGCAGGAGATCCTTGGCCAATCCGCTACGCCTGAAACCGTCGCCGCCC TGCGCGAGCAATTGGGCCTGAACGACTCGATGGTGACGCGATATGCCAACTGGCTGGGGGATGTGCTGCAAGGGGATCTG GGGGAGAGTCTCGCCAACGGACAATCGGTGTCCGAACTGATCGGACGCCGCCTTGGCTGGACCCTGTCACTGGCGCTTTA TGCGGCCGCCATCGCGGTGCCCTTGTCCCTGACCCTCGGCATCCTCGCAGCCCTCTTCCGCAACTCCTTCTTCGACCGCT TCGCCAATGCCTCGGCGCTCACGTCGATCTCCTTCCCCGAATTCTTCGTCGCCTACATCCTTATCTTCTATCTGGCGGGC GCAGGCGGGCCGTTCCCGTCGATCTCCAATATGCGCGGCGTGGAGGGGTTTGGCGATTACCTCTACCGCACCTTCCTGCC CGCTTTGACGCTGACCTTGGTCGTCACCGCCCATATGATGCGGATGACGCGGGCCGCGATCATCAACCTTCTGGCGTCGC CGTACATTGAAATGGCGCGGCTGAAGGGCATGTCGCCCATGCGCGTTGTGGTGAAACACGCGCTGCCCAATGCGCTGGCC CCGATCATCAACGTGGTGGCCCTGAACCTTGCGTATCTGATCACCGGCGTCGTCGTGGTGGAGGTCGTCTTCGTCTACCC CGGCCTTGGCCAGTTGATGGTTGATTCAGTGTCGGCCCGTGACATGCCGGTCGTCCAAGGCATCGCCCTTGTCTTCGCCG CCGCCTACGTGCTGCTGAACCTCACCGCGGATGTGTTGGCGACCTTGTCCAACCCCCGCCTCGTGCACCGTCGCTGA
Upstream 100 bases:
>100_bases TTGGTCGGGGGTTCTTCGTTCCGGAACGGGCACATAGGCCCGGGGAACCACAATCAAGAACAAAGCGGCCCTCAGACCGG CCCGAAGGATAACCCCCGCC
Downstream 100 bases:
>100_bases GGGGGGCTGGATATGGGATTTCTCATGGGATTGGTGTGGTTGGTTGGCGTCATCGTGGCGGCGATGGCTGCCGGGTGGAT CTTTCGCCAGATCTTGGTTC
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MSHIWIMIAQRLALGLVTLFVVSLIIFLGTELLPGDFAQEILGQSATPETVAALREQLGLNDSMVTRYANWLGDVLQGDL GESLANGQSVSELIGRRLGWTLSLALYAAAIAVPLSLTLGILAALFRNSFFDRFANASALTSISFPEFFVAYILIFYLAG AGGPFPSISNMRGVEGFGDYLYRTFLPALTLTLVVTAHMMRMTRAAIINLLASPYIEMARLKGMSPMRVVVKHALPNALA PIINVVALNLAYLITGVVVVEVVFVYPGLGQLMVDSVSARDMPVVQGIALVFAAAYVLLNLTADVLATLSNPRLVHRR
Sequences:
>Translated_318_residues MSHIWIMIAQRLALGLVTLFVVSLIIFLGTELLPGDFAQEILGQSATPETVAALREQLGLNDSMVTRYANWLGDVLQGDL GESLANGQSVSELIGRRLGWTLSLALYAAAIAVPLSLTLGILAALFRNSFFDRFANASALTSISFPEFFVAYILIFYLAG AGGPFPSISNMRGVEGFGDYLYRTFLPALTLTLVVTAHMMRMTRAAIINLLASPYIEMARLKGMSPMRVVVKHALPNALA PIINVVALNLAYLITGVVVVEVVFVYPGLGQLMVDSVSARDMPVVQGIALVFAAAYVLLNLTADVLATLSNPRLVHRR >Mature_317_residues SHIWIMIAQRLALGLVTLFVVSLIIFLGTELLPGDFAQEILGQSATPETVAALREQLGLNDSMVTRYANWLGDVLQGDLG ESLANGQSVSELIGRRLGWTLSLALYAAAIAVPLSLTLGILAALFRNSFFDRFANASALTSISFPEFFVAYILIFYLAGA GGPFPSISNMRGVEGFGDYLYRTFLPALTLTLVVTAHMMRMTRAAIINLLASPYIEMARLKGMSPMRVVVKHALPNALAP IINVVALNLAYLITGVVVVEVVFVYPGLGQLMVDSVSARDMPVVQGIALVFAAAYVLLNLTADVLATLSNPRLVHRR
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=37.620578778135, Blast_Score=203, Evalue=1e-53, Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=33.4328358208955, Blast_Score=176, Evalue=3e-45, Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=35.2409638554217, Blast_Score=144, Evalue=7e-36, Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=30, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1787497, Length=309, Percent_Identity=30.42071197411, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=29.2253521126761, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1787550, Length=279, Percent_Identity=24.7311827956989, Blast_Score=114, Evalue=7e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 34329; Mature: 34198
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHIWIMIAQRLALGLVTLFVVSLIIFLGTELLPGDFAQEILGQSATPETVAALREQLGL CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC NDSMVTRYANWLGDVLQGDLGESLANGQSVSELIGRRLGWTLSLALYAAAIAVPLSLTLG CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILAALFRNSFFDRFANASALTSISFPEFFVAYILIFYLAGAGGPFPSISNMRGVEGFGDY HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH LYRTFLPALTLTLVVTAHMMRMTRAAIINLLASPYIEMARLKGMSPMRVVVKHALPNALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH PIINVVALNLAYLITGVVVVEVVFVYPGLGQLMVDSVSARDMPVVQGIALVFAAAYVLLN HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LTADVLATLSNPRLVHRR HHHHHHHHHCCCCCCCCC >Mature Secondary Structure SHIWIMIAQRLALGLVTLFVVSLIIFLGTELLPGDFAQEILGQSATPETVAALREQLGL CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC NDSMVTRYANWLGDVLQGDLGESLANGQSVSELIGRRLGWTLSLALYAAAIAVPLSLTLG CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILAALFRNSFFDRFANASALTSISFPEFFVAYILIFYLAGAGGPFPSISNMRGVEGFGDY HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH LYRTFLPALTLTLVVTAHMMRMTRAAIINLLASPYIEMARLKGMSPMRVVVKHALPNALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH PIINVVALNLAYLITGVVVVEVVFVYPGLGQLMVDSVSARDMPVVQGIALVFAAAYVLLN HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LTADVLATLSNPRLVHRR HHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]