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The map label for this gene is yhjC [C]

Identifier: 89056235

GI number: 89056235

Start: 3825009

End: 3825923

Strand: Direct

Name: yhjC [C]

Synonym: Jann_3744

Alternate gene names: 89056235

Gene position: 3825009-3825923 (Clockwise)

Preceding gene: 89056232

Following gene: 89056247

Centisome position: 88.58

GC content: 59.13

Gene sequence:

>915_bases
ATGAACCGACTAGCTGAAATCGAATGCTTCATCGCGGTCGTGGACGCGGGGTCGCAGCTTGCAGCGTCCAAGACGATGAA
CATCGCAGTCTCGGCCATTCACCGGCGCATCAAAGATCTTGAGGCGCGGCTTGGCGTCACCCTGACCCGCCGGACGTCCC
ACGGTACGGCGCTGACACCGGAGGGTCGCGCTTACTACCAGCGATGTGTGAGCGTCGTGGCGGACCTGAATGAAGCGGAT
GCCCGCGCCACCGGCGAGTTGCACAAGGCGTCTGGCTTGATCCGGATGACGGTTCCAATCGCATTTGGCACGCGGCATCT
TGCGCCGATCATGACCAGCTTCTCAGCCGAGCATCCGGACATTCGGTTTGAGTTGAACATCAGCGATCACCACGTGGATC
TGCTTGAGGATGGCTATGATCTGGCCATCCGGATTGGCGGCGACCAGAAACCGCAACTGGGCGCGGTAGAGCTGTTCAAG
GTTCAATATGCCCTCACCGCGAGCCCGGCTTTTTGGGAAACACATGGCCTTCCCCAATCCCCCGAAGACTTGGTCGGTCT
CCCGACGTTGGTGTACCGCGCGGGGGCCGTGCCGTCTTACTGGCCGTTTCGAAACAAGGCGGGGGAGGTGTCCAAAATCC
CGATACAGCCCCGCTACATTGCGAACAATGGCGAGTTCTTAGTTGAAGCCGCGAAGGCCGGTCTGGGCGTGTCGCTGGAG
CCAACATTCGTATGTGGCGAAGCGTTGCAAGCAGGTAAGTTGGTCGCCGCCCTTACAGAATATGATACGTTCGACAGAGC
AGCGCAGATCGTGACACCTGCCAATCGCCCCCTGTCGTTCCGGGTGCGAGAGTTTTTGGGAGTTTTGCAAACTGAGCTAT
CCCAGCCGGGTCGATGGAATGTGGTGCAAACTTGA

Upstream 100 bases:

>100_bases
ATGAGTAATCTCCGGTTTGTGTTGCTGAAATGGACGCTATCGCTTTCGAATTATTCGATGTAGATGGTAATTATAGAAAC
AAGAATTCTCAAAATTAGAA

Downstream 100 bases:

>100_bases
ATGCGCACCGGCTTTTGACCCACGGTGTGCGTCGACCAACAACGGCAGCTTCGACCCGCACAGGTGCTATTCGTTGCGAC
TCAATGCCCCACTTTCGACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNRLAEIECFIAVVDAGSQLAASKTMNIAVSAIHRRIKDLEARLGVTLTRRTSHGTALTPEGRAYYQRCVSVVADLNEAD
ARATGELHKASGLIRMTVPIAFGTRHLAPIMTSFSAEHPDIRFELNISDHHVDLLEDGYDLAIRIGGDQKPQLGAVELFK
VQYALTASPAFWETHGLPQSPEDLVGLPTLVYRAGAVPSYWPFRNKAGEVSKIPIQPRYIANNGEFLVEAAKAGLGVSLE
PTFVCGEALQAGKLVAALTEYDTFDRAAQIVTPANRPLSFRVREFLGVLQTELSQPGRWNVVQT

Sequences:

>Translated_304_residues
MNRLAEIECFIAVVDAGSQLAASKTMNIAVSAIHRRIKDLEARLGVTLTRRTSHGTALTPEGRAYYQRCVSVVADLNEAD
ARATGELHKASGLIRMTVPIAFGTRHLAPIMTSFSAEHPDIRFELNISDHHVDLLEDGYDLAIRIGGDQKPQLGAVELFK
VQYALTASPAFWETHGLPQSPEDLVGLPTLVYRAGAVPSYWPFRNKAGEVSKIPIQPRYIANNGEFLVEAAKAGLGVSLE
PTFVCGEALQAGKLVAALTEYDTFDRAAQIVTPANRPLSFRVREFLGVLQTELSQPGRWNVVQT
>Mature_304_residues
MNRLAEIECFIAVVDAGSQLAASKTMNIAVSAIHRRIKDLEARLGVTLTRRTSHGTALTPEGRAYYQRCVSVVADLNEAD
ARATGELHKASGLIRMTVPIAFGTRHLAPIMTSFSAEHPDIRFELNISDHHVDLLEDGYDLAIRIGGDQKPQLGAVELFK
VQYALTASPAFWETHGLPQSPEDLVGLPTLVYRAGAVPSYWPFRNKAGEVSKIPIQPRYIANNGEFLVEAAKAGLGVSLE
PTFVCGEALQAGKLVAALTEYDTFDRAAQIVTPANRPLSFRVREFLGVLQTELSQPGRWNVVQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=31.9444444444444, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=26.4214046822742, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=27.4576271186441, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081978, Length=259, Percent_Identity=28.957528957529, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787128, Length=307, Percent_Identity=26.3843648208469, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=24.496644295302, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787589, Length=266, Percent_Identity=23.3082706766917, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789173, Length=239, Percent_Identity=25.9414225941423, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33204; Mature: 33204

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLAEIECFIAVVDAGSQLAASKTMNIAVSAIHRRIKDLEARLGVTLTRRTSHGTALTP
CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECC
EGRAYYQRCVSVVADLNEADARATGELHKASGLIRMTVPIAFGTRHLAPIMTSFSAEHPD
CCHHHHHHHHHHHHCCCHHCCHHHCCHHHHCCEEEEEEEEEECCHHHHHHHHHCCCCCCC
IRFELNISDHHVDLLEDGYDLAIRIGGDQKPQLGAVELFKVQYALTASPAFWETHGLPQS
EEEEEECCCCEEEHHCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCHHCCCCCCC
PEDLVGLPTLVYRAGAVPSYWPFRNKAGEVSKIPIQPRYIANNGEFLVEAAKAGLGVSLE
CHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCEEEEEHHCCCCCCCC
PTFVCGEALQAGKLVAALTEYDTFDRAAQIVTPANRPLSFRVREFLGVLQTELSQPGRWN
CCEEEHHHHHHCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCCCEE
VVQT
CCCC
>Mature Secondary Structure
MNRLAEIECFIAVVDAGSQLAASKTMNIAVSAIHRRIKDLEARLGVTLTRRTSHGTALTP
CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECC
EGRAYYQRCVSVVADLNEADARATGELHKASGLIRMTVPIAFGTRHLAPIMTSFSAEHPD
CCHHHHHHHHHHHHCCCHHCCHHHCCHHHHCCEEEEEEEEEECCHHHHHHHHHCCCCCCC
IRFELNISDHHVDLLEDGYDLAIRIGGDQKPQLGAVELFKVQYALTASPAFWETHGLPQS
EEEEEECCCCEEEHHCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCHHCCCCCCC
PEDLVGLPTLVYRAGAVPSYWPFRNKAGEVSKIPIQPRYIANNGEFLVEAAKAGLGVSLE
CHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCEEEEEHHCCCCCCCC
PTFVCGEALQAGKLVAALTEYDTFDRAAQIVTPANRPLSFRVREFLGVLQTELSQPGRWN
CCEEEHHHHHHCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCCCEE
VVQT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]