| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89056079
Identifier: 89056079
GI number: 89056079
Start: 3665762
End: 3666025
Strand: Direct
Name: 89056079
Synonym: Jann_3588
Alternate gene names: NA
Gene position: 3665762-3666025 (Clockwise)
Preceding gene: 89056078
Following gene: 89056080
Centisome position: 84.9
GC content: 62.88
Gene sequence:
>264_bases ATGGCATATCAACTTCCAGACCACCTTACCCCTGAAATCTGGCTGAGCCAGGTCCTGTCATCTCGGGAAGCCCAGGGCGG CGGCATCGTGAAGCGACAGGTCCGGGATGTGGAGCGGCTCGTGGGACGCGACGCGTTTCTGGAAGAGGCAGAGCGGCGCG GGTTCCAGGTGGTGCAGAACAACCGCCATTTCGTGATCTTCTGCAACGCGTTGCCGATCCGCCGGGTCCGGGCGGATTGC GGGCTTTCGAAAGCCCGCCCTTAG
Upstream 100 bases:
>100_bases CCGCCATTGAAAGCGCGCCGGGTGTGAAAGATGCGGCGCGGATGCAGGCTTTTTCGGCGGCGTTAACTGACGGATAACCA AGTCGCGCCTAGGCTACGGC
Downstream 100 bases:
>100_bases GCCCGCGCGCGCGGGCCGTTCACGCGGTTTGAAAACCGCGTGCGTCAAGGCCTTTCGAAAGGCCTTCCCCTTGCCCCGCC CACATCCGCGCGCTACCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MAYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQNNRHFVIFCNALPIRRVRADC GLSKARP
Sequences:
>Translated_87_residues MAYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQNNRHFVIFCNALPIRRVRADC GLSKARP >Mature_86_residues AYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQNNRHFVIFCNALPIRRVRADCG LSKARP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9973; Mature: 9841
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQN CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEEC NRHFVIFCNALPIRRVRADCGLSKARP CCCEEEEECCCCHHHHHHHCCCCCCCC >Mature Secondary Structure AYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQN CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEEC NRHFVIFCNALPIRRVRADCGLSKARP CCCEEEEECCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA