Click here to switch to the map view.

The map label for this gene is phyR [H]

Identifier: 89056057

GI number: 89056057

Start: 3631040

End: 3631867

Strand: Direct

Name: phyR [H]

Synonym: Jann_3566

Alternate gene names: 89056057

Gene position: 3631040-3631867 (Clockwise)

Preceding gene: 89056048

Following gene: 89056058

Centisome position: 84.09

GC content: 59.78

Gene sequence:

>828_bases
ATGGCAACCACCGAAAACACCCGCGATTTAAGCACAGAATTGGTGGCGGAACTGCCCTTTCTGCGCCGTTACGCGCGGGC
GCTGACAGGGGCGCAGTCTACCGGCGACCGATACGCTATGGCGACACTGGAGGCGATCGTTGCCGATCCCACAACCGTGG
CGGAGGACATGACAACGAAGGTGGGGCTTTTTCGGATGTTTCACGGTATCTGGTCCAGTTCGGGCGCGCCGATGGCCGAG
GAGGGCGAGAATACTGATTTGCTGGAGGTGCGCGCGCAGTGGCGCCTGTCGTACCTGACCGCCAACACACGCGAGGCGCT
GCTGCTTCACACGGTGGAAGGGTTTGCGTTTGAAGCCGTCGCCTTAATCATGGACGTATCGCAAAGCGATGCGGAAGAGC
TTGTCACCCGCGCCCGGACGGAGATGGGCGATATGGTCTCTGGCAACATCCTCGTGATCGAAGACGAGGGCATTATCGCG
ATGGACCTAAAGTCGATCGTCACCGATATGGGTCACACCGTCACTGATACTGCTCGCACCCGTGACGACGCAATCGCCAA
GGGTAAGGCGACGGTGCCGGATCTGATCCTCGCCGATATTCAATTGGCAGATAAATCGTCGGGCATCGACGCCGTGAATG
CGCTGCTTGAGGAGCTGGGTGACCGCCCGGTCATCTTCATCACCGCCTTCCCGGAACGTCTGCTGACCGGTGACCGACCT
GAACCCGCCTTCCTGATCACCAAGCCATATTCCGAAGATCAGGTCCGCGCCGCCGTCAGTCAGGCCATGTTCTTTGCGAC
GACCGAACGGATGAATGTCGCCGTCTGA

Upstream 100 bases:

>100_bases
GAAGGCATGTTTCACCGATCTTGAAATAAAAGTTGTCTGGGTGGGAACCAATGACTGAGCCAGAAAGTTCCCAATAAAAT
GTGCACGAGGAGAAGTTAGC

Downstream 100 bases:

>100_bases
TATGTGCCATTCGATCATGAAAAAGCCCTGGCCAAACGGTCGGGGCTTTTTTCGTTCCTGCATGGCGACGACGGTAGCTT
GCCGTGATGGTGCGTAATAT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MATTENTRDLSTELVAELPFLRRYARALTGAQSTGDRYAMATLEAIVADPTTVAEDMTTKVGLFRMFHGIWSSSGAPMAE
EGENTDLLEVRAQWRLSYLTANTREALLLHTVEGFAFEAVALIMDVSQSDAEELVTRARTEMGDMVSGNILVIEDEGIIA
MDLKSIVTDMGHTVTDTARTRDDAIAKGKATVPDLILADIQLADKSSGIDAVNALLEELGDRPVIFITAFPERLLTGDRP
EPAFLITKPYSEDQVRAAVSQAMFFATTERMNVAV

Sequences:

>Translated_275_residues
MATTENTRDLSTELVAELPFLRRYARALTGAQSTGDRYAMATLEAIVADPTTVAEDMTTKVGLFRMFHGIWSSSGAPMAE
EGENTDLLEVRAQWRLSYLTANTREALLLHTVEGFAFEAVALIMDVSQSDAEELVTRARTEMGDMVSGNILVIEDEGIIA
MDLKSIVTDMGHTVTDTARTRDDAIAKGKATVPDLILADIQLADKSSGIDAVNALLEELGDRPVIFITAFPERLLTGDRP
EPAFLITKPYSEDQVRAAVSQAMFFATTERMNVAV
>Mature_274_residues
ATTENTRDLSTELVAELPFLRRYARALTGAQSTGDRYAMATLEAIVADPTTVAEDMTTKVGLFRMFHGIWSSSGAPMAEE
GENTDLLEVRAQWRLSYLTANTREALLLHTVEGFAFEAVALIMDVSQSDAEELVTRARTEMGDMVSGNILVIEDEGIIAM
DLKSIVTDMGHTVTDTARTRDDAIAKGKATVPDLILADIQLADKSSGIDAVNALLEELGDRPVIFITAFPERLLTGDRPE
PAFLITKPYSEDQVRAAVSQAMFFATTERMNVAV

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29995; Mature: 29864

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTENTRDLSTELVAELPFLRRYARALTGAQSTGDRYAMATLEAIVADPTTVAEDMTTK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
VGLFRMFHGIWSSSGAPMAEEGENTDLLEVRAQWRLSYLTANTREALLLHTVEGFAFEAV
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEECCCHHHHHH
ALIMDVSQSDAEELVTRARTEMGDMVSGNILVIEDEGIIAMDLKSIVTDMGHTVTDTART
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEHHHHHHHHCCCCCCCHHHH
RDDAIAKGKATVPDLILADIQLADKSSGIDAVNALLEELGDRPVIFITAFPERLLTGDRP
HHHHHHCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCC
EPAFLITKPYSEDQVRAAVSQAMFFATTERMNVAV
CCCEEEECCCCHHHHHHHHHHHHHHHHHCHHEECC
>Mature Secondary Structure 
ATTENTRDLSTELVAELPFLRRYARALTGAQSTGDRYAMATLEAIVADPTTVAEDMTTK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
VGLFRMFHGIWSSSGAPMAEEGENTDLLEVRAQWRLSYLTANTREALLLHTVEGFAFEAV
HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEECCCHHHHHH
ALIMDVSQSDAEELVTRARTEMGDMVSGNILVIEDEGIIAMDLKSIVTDMGHTVTDTART
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEHHHHHHHHCCCCCCCHHHH
RDDAIAKGKATVPDLILADIQLADKSSGIDAVNALLEELGDRPVIFITAFPERLLTGDRP
HHHHHHCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCC
EPAFLITKPYSEDQVRAAVSQAMFFATTERMNVAV
CCCEEEECCCCHHHHHHHHHHHHHHHHHCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA