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The map label for this gene is yagI [H]

Identifier: 89056002

GI number: 89056002

Start: 3567096

End: 3567914

Strand: Direct

Name: yagI [H]

Synonym: Jann_3511

Alternate gene names: 89056002

Gene position: 3567096-3567914 (Clockwise)

Preceding gene: 89055996

Following gene: 89056003

Centisome position: 82.61

GC content: 65.2

Gene sequence:

>819_bases
ATGTCCTCCGCGACAAAGACCCTAGAGCTTTTGGCGCATTTCACGACGGCGCGGCCCGAGATCGGGCTATCCGCGATGTG
CCGTTTGGCGGGGCGCGACAAGGCGACGACCTACAGGCATCTGCAATCGCTGGAAGAGGTTGGTTTTGTGGAGCAAAACC
CAACCAACAAGATGTACCGCCTCGGCCCCGCGCTGCTGCAACTGGCGCAAACGCGCGAGGCGACGGTGCCCCGCAAAGCC
GCGGCAGAAGCCGCATTGGCCCGTCTCGCGAACGCCACCGGAGAGACCAGCCACGTCTCGGTCCTGTCCGGCAGCACCGT
TTACGCGCTCGCGTCGTGCGAATCGCACAGCCACTCCACCCGGGTTATCATCGACGTGGATATCTTACCGCTCCATGCGA
CCGGCTCCGGCCTCTGCGCGCTGGCGTTTGGGCCGTCGGAGCTGATGGATGTGGTGGGCGATGCACCCGAGGTCTTCACC
CCTCGCACGCCCGCTACGGGCGCCCAGGTGGCGCGTGCCGTCGCGCAGACCCGCGACACCGGCTTCGCCCAATCCGACCG
CCACTACGGCGAGGATACGCATTCGATCTCGGCCCCGATCTTTGATCAGACAGGACACTACGCGGGCGCTGTGACCGTGG
CCAGCGTGGCGACCCGTTTCACGCCAGCGCTTGGAGACTGCATGAAACACCACCTCGTCATGGCGGCCAGAGATATCACC
CGAAATTGGGGCGGCACCCTGCCCCGCAGTGTGGAAGCCGCCTGGGCCCGCACGCTGACTGACACACTGGACCCCTCTTC
TATGGACATCGCCTCATGA

Upstream 100 bases:

>100_bases
GCGGTTCATATGTTGAACCATCATTTCATAAAAAAGGTTGCCTTGTGAAATATCCTCTGTCAAACTTTTTCTGAAATTAG
GATGGAAAGGGGCGGTCTGG

Downstream 100 bases:

>100_bases
AAGACTCCAACTTCCTGAAGGAAAACAACGGGCGTCTGATGTGGCACCCGATGACCTCCCCCAAAGACAGCATCGACACG
CCGCCCAAGATCGTGACCGA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSSATKTLELLAHFTTARPEIGLSAMCRLAGRDKATTYRHLQSLEEVGFVEQNPTNKMYRLGPALLQLAQTREATVPRKA
AAEAALARLANATGETSHVSVLSGSTVYALASCESHSHSTRVIIDVDILPLHATGSGLCALAFGPSELMDVVGDAPEVFT
PRTPATGAQVARAVAQTRDTGFAQSDRHYGEDTHSISAPIFDQTGHYAGAVTVASVATRFTPALGDCMKHHLVMAARDIT
RNWGGTLPRSVEAAWARTLTDTLDPSSMDIAS

Sequences:

>Translated_272_residues
MSSATKTLELLAHFTTARPEIGLSAMCRLAGRDKATTYRHLQSLEEVGFVEQNPTNKMYRLGPALLQLAQTREATVPRKA
AAEAALARLANATGETSHVSVLSGSTVYALASCESHSHSTRVIIDVDILPLHATGSGLCALAFGPSELMDVVGDAPEVFT
PRTPATGAQVARAVAQTRDTGFAQSDRHYGEDTHSISAPIFDQTGHYAGAVTVASVATRFTPALGDCMKHHLVMAARDIT
RNWGGTLPRSVEAAWARTLTDTLDPSSMDIAS
>Mature_271_residues
SSATKTLELLAHFTTARPEIGLSAMCRLAGRDKATTYRHLQSLEEVGFVEQNPTNKMYRLGPALLQLAQTREATVPRKAA
AEAALARLANATGETSHVSVLSGSTVYALASCESHSHSTRVIIDVDILPLHATGSGLCALAFGPSELMDVVGDAPEVFTP
RTPATGAQVARAVAQTRDTGFAQSDRHYGEDTHSISAPIFDQTGHYAGAVTVASVATRFTPALGDCMKHHLVMAARDITR
NWGGTLPRSVEAAWARTLTDTLDPSSMDIAS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=246, Percent_Identity=25.2032520325203, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788131, Length=250, Percent_Identity=23.2, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788581, Length=226, Percent_Identity=22.5663716814159, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28870; Mature: 28739

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSATKTLELLAHFTTARPEIGLSAMCRLAGRDKATTYRHLQSLEEVGFVEQNPTNKMYR
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
LGPALLQLAQTREATVPRKAAAEAALARLANATGETSHVSVLSGSTVYALASCESHSHST
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCC
RVIIDVDILPLHATGSGLCALAFGPSELMDVVGDAPEVFTPRTPATGAQVARAVAQTRDT
EEEEEEEEEEEECCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
GFAQSDRHYGEDTHSISAPIFDQTGHYAGAVTVASVATRFTPALGDCMKHHLVMAARDIT
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
RNWGGTLPRSVEAAWARTLTDTLDPSSMDIAS
HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SSATKTLELLAHFTTARPEIGLSAMCRLAGRDKATTYRHLQSLEEVGFVEQNPTNKMYR
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
LGPALLQLAQTREATVPRKAAAEAALARLANATGETSHVSVLSGSTVYALASCESHSHST
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCC
RVIIDVDILPLHATGSGLCALAFGPSELMDVVGDAPEVFTPRTPATGAQVARAVAQTRDT
EEEEEEEEEEEECCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
GFAQSDRHYGEDTHSISAPIFDQTGHYAGAVTVASVATRFTPALGDCMKHHLVMAARDIT
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
RNWGGTLPRSVEAAWARTLTDTLDPSSMDIAS
HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]