| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055932
Identifier: 89055932
GI number: 89055932
Start: 3486925
End: 3488763
Strand: Direct
Name: 89055932
Synonym: Jann_3441
Alternate gene names: NA
Gene position: 3486925-3488763 (Clockwise)
Preceding gene: 89055930
Following gene: 89055933
Centisome position: 80.75
GC content: 61.07
Gene sequence:
>1839_bases ATGGGTGTATTCCGTCGCGAGGACCTCTGGCCGATTGGGTTTATGATTAGGAGAGACGGCATGTTTGGCCTCTTCCAGAA AATGCAGACGTCCGCCGGGGCCATCGCCGCCCGTCTGGCGCCACGCCAATTTATGCGGCGCGAAGAGGGGACGATCACCG CGTTCGCCACGATGTTGTTCATATTGATGGTCGGCGCCAGCGGCATCGCCATTGACGTGATGCGGTATGAAACCCAGCGC TCGCAACTTCAGTACACTTTGGACCGCGCCGTGCTGGCAGCGGCCTCCCTGACCCAGCCCTACGACCCGGAAGGCGTCGT GCGCGACTATTTCGCAATCGCGGGCATTGACGGCTACCGCCTGGATGTGCGCGTCGAGGAAGGCCTGAACTTCCGCCGCG TGCATGCCTATGCGGAGTTGGAAGTGCGCTCTATCTTCATGCAGATGTTCGGCGTTCGCGCCATGACCTCTCCCGCCATC GGCGCGGCCGAGGAACGGGTGCGGCGGATCGAAGTGTCCATGGTTCTCGATATCTCTGGATCCATGGGGGAAAACAACCG CATGACCAACATGCGGCCTGCCGCCCGCGAGTTCGTGACCGAGGTGCTGAGCGCCAACGAAAACGTCAATAACGAGCTAC TCGTTTCGGTGTCCATTGTGCCCTATAACGGGCGCGTGAACGGCGGCGACCTGATCGAAAGCGTGTTCACCTATGACGAT CTGCACAGCGAGTCCAACTGCACGCGGTTCGCGGAGGCCGACTTCACATCGACAGCCATTGACCCCGCGGTTCCCCTGCA GCGGATCGCCCATTGGGATCGCGGCAATGAAGAGGAAGACGAGTCCTTTCAGTGGGCCCATTGTCAGACCGATCAATACG GGGCGATCCTGCCCTGGCAGCATACGGAGGCTGCGCTGCACGCCCATATCGACAGCCTCAACACCGGCGGGTGGACAGCG ATTGACCTTGGCATGAATTGGGCCGTGGGCCTGCTGGATCCCGCCGCTGCGCCGGCGCTGACCGGGCTGATCGCGTCAGG CCATGTGCACCCGGAATTCTCGGACCGTCCCGCGCCTTACCGCGACGGCGATCGGGCCACAACGATCGACGATGAGACGA TCAAGGTGGTCGTGCTGATGACGGATGGTGACAACACCAGACAATATGATCTGCGCGATATCTACGACAGCGCCGGTCGC TATGTGGGCTTCCGCGAGGGGTATGCACCGATCTTCCGCAACACCTCCACCGGCCAGTATTCTATCTGGTGGGAGGATCA GGGCGCATTCTGGATCCCAACGGGCAATACTCGTGATCCTGGCGGCTCCTGGCAAGCTCAGCCTGACGGCGGGTGGAGCA GATATGGCATGACCGCCCTCGAATTCACCGAAGATCGGGCCAATGCGTTCGATCCGGCCGAGGCTGGCAATGGCGAAGTC CTTCTCTGGGCTGACCTCTTTTCCGACCACACGGCCGGATACATTGCCGCAGAATGGTTCCATGCGCCCGCCGACGAGTC GGAGCAGTGGGATTTTTACAATCAGCTCGCCGAGAACCCGAGCCACAACTACATCGGTTGGGATTCCGATGGCGTGCGCC CGGACGGTGTGGTCGGCCAAAGTCAGGCAGACACCAACCTGATGGCCATTTGCGACGTGGCCAATGCGGCGGGCATCATT GTCTATGCCATCGGCTTTGAAGCGCCGGATCGTGGCCAGCGGGTCATGGAGCATTGCGCGAGCGTTGACGCCAACTACTT TGACGTTGAGGGCCGCGAAATCTCGGAGGCATTCGCATCCATCGCCCGGTCGATCAACCAGCTGCGACTGATCCAATGA
Upstream 100 bases:
>100_bases ATCAGGCACAGACGGCCCCAAGCCGAGCGAAAGAACCCGGTTCCTCCATGCTCCCGCCCCATTTCTGCCTTGCTTTCAGA TGACAAGGTCCCTCGGTGCC
Downstream 100 bases:
>100_bases TGAGGTCTCTTCCCCACACCCTACGGGCCTTCTGGAGGGACGAGACCGCCACGGCGACGCTGGAAATGGTCATCGTCTTC CCGCTGATGATGATTGTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MGVFRREDLWPIGFMIRRDGMFGLFQKMQTSAGAIAARLAPRQFMRREEGTITAFATMLFILMVGASGIAIDVMRYETQR SQLQYTLDRAVLAAASLTQPYDPEGVVRDYFAIAGIDGYRLDVRVEEGLNFRRVHAYAELEVRSIFMQMFGVRAMTSPAI GAAEERVRRIEVSMVLDISGSMGENNRMTNMRPAAREFVTEVLSANENVNNELLVSVSIVPYNGRVNGGDLIESVFTYDD LHSESNCTRFAEADFTSTAIDPAVPLQRIAHWDRGNEEEDESFQWAHCQTDQYGAILPWQHTEAALHAHIDSLNTGGWTA IDLGMNWAVGLLDPAAAPALTGLIASGHVHPEFSDRPAPYRDGDRATTIDDETIKVVVLMTDGDNTRQYDLRDIYDSAGR YVGFREGYAPIFRNTSTGQYSIWWEDQGAFWIPTGNTRDPGGSWQAQPDGGWSRYGMTALEFTEDRANAFDPAEAGNGEV LLWADLFSDHTAGYIAAEWFHAPADESEQWDFYNQLAENPSHNYIGWDSDGVRPDGVVGQSQADTNLMAICDVANAAGII VYAIGFEAPDRGQRVMEHCASVDANYFDVEGREISEAFASIARSINQLRLIQ
Sequences:
>Translated_612_residues MGVFRREDLWPIGFMIRRDGMFGLFQKMQTSAGAIAARLAPRQFMRREEGTITAFATMLFILMVGASGIAIDVMRYETQR SQLQYTLDRAVLAAASLTQPYDPEGVVRDYFAIAGIDGYRLDVRVEEGLNFRRVHAYAELEVRSIFMQMFGVRAMTSPAI GAAEERVRRIEVSMVLDISGSMGENNRMTNMRPAAREFVTEVLSANENVNNELLVSVSIVPYNGRVNGGDLIESVFTYDD LHSESNCTRFAEADFTSTAIDPAVPLQRIAHWDRGNEEEDESFQWAHCQTDQYGAILPWQHTEAALHAHIDSLNTGGWTA IDLGMNWAVGLLDPAAAPALTGLIASGHVHPEFSDRPAPYRDGDRATTIDDETIKVVVLMTDGDNTRQYDLRDIYDSAGR YVGFREGYAPIFRNTSTGQYSIWWEDQGAFWIPTGNTRDPGGSWQAQPDGGWSRYGMTALEFTEDRANAFDPAEAGNGEV LLWADLFSDHTAGYIAAEWFHAPADESEQWDFYNQLAENPSHNYIGWDSDGVRPDGVVGQSQADTNLMAICDVANAAGII VYAIGFEAPDRGQRVMEHCASVDANYFDVEGREISEAFASIARSINQLRLIQ >Mature_611_residues GVFRREDLWPIGFMIRRDGMFGLFQKMQTSAGAIAARLAPRQFMRREEGTITAFATMLFILMVGASGIAIDVMRYETQRS QLQYTLDRAVLAAASLTQPYDPEGVVRDYFAIAGIDGYRLDVRVEEGLNFRRVHAYAELEVRSIFMQMFGVRAMTSPAIG AAEERVRRIEVSMVLDISGSMGENNRMTNMRPAAREFVTEVLSANENVNNELLVSVSIVPYNGRVNGGDLIESVFTYDDL HSESNCTRFAEADFTSTAIDPAVPLQRIAHWDRGNEEEDESFQWAHCQTDQYGAILPWQHTEAALHAHIDSLNTGGWTAI DLGMNWAVGLLDPAAAPALTGLIASGHVHPEFSDRPAPYRDGDRATTIDDETIKVVVLMTDGDNTRQYDLRDIYDSAGRY VGFREGYAPIFRNTSTGQYSIWWEDQGAFWIPTGNTRDPGGSWQAQPDGGWSRYGMTALEFTEDRANAFDPAEAGNGEVL LWADLFSDHTAGYIAAEWFHAPADESEQWDFYNQLAENPSHNYIGWDSDGVRPDGVVGQSQADTNLMAICDVANAAGIIV YAIGFEAPDRGQRVMEHCASVDANYFDVEGREISEAFASIARSINQLRLIQ
Specific function: Unknown
COG id: COG4961
COG function: function code U; Flp pilus assembly protein TadG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68089; Mature: 67958
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVFRREDLWPIGFMIRRDGMFGLFQKMQTSAGAIAARLAPRQFMRREEGTITAFATMLF CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHH ILMVGASGIAIDVMRYETQRSQLQYTLDRAVLAAASLTQPYDPEGVVRDYFAIAGIDGYR HHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEE LDVRVEEGLNFRRVHAYAELEVRSIFMQMFGVRAMTSPAIGAAEERVRRIEVSMVLDISG EEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHEEEEEEEEEECC SMGENNRMTNMRPAAREFVTEVLSANENVNNELLVSVSIVPYNGRVNGGDLIESVFTYDD CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHH LHSESNCTRFAEADFTSTAIDPAVPLQRIAHWDRGNEEEDESFQWAHCQTDQYGAILPWQ HCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCC HTEAALHAHIDSLNTGGWTAIDLGMNWAVGLLDPAAAPALTGLIASGHVHPEFSDRPAPY CHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC RDGDRATTIDDETIKVVVLMTDGDNTRQYDLRDIYDSAGRYVGFREGYAPIFRNTSTGQY CCCCCCEEECCCEEEEEEEEECCCCCCEEHHHHHHHHCCCEEEECCCCCHHHCCCCCCEE SIWWEDQGAFWIPTGNTRDPGGSWQAQPDGGWSRYGMTALEFTEDRANAFDPAEAGNGEV EEEEECCCCEEECCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCE LLWADLFSDHTAGYIAAEWFHAPADESEQWDFYNQLAENPSHNYIGWDSDGVRPDGVVGQ EEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC SQADTNLMAICDVANAAGIIVYAIGFEAPDRGQRVMEHCASVDANYFDVEGREISEAFAS CCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHH IARSINQLRLIQ HHHHHHHHCCCC >Mature Secondary Structure GVFRREDLWPIGFMIRRDGMFGLFQKMQTSAGAIAARLAPRQFMRREEGTITAFATMLF CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHH ILMVGASGIAIDVMRYETQRSQLQYTLDRAVLAAASLTQPYDPEGVVRDYFAIAGIDGYR HHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEE LDVRVEEGLNFRRVHAYAELEVRSIFMQMFGVRAMTSPAIGAAEERVRRIEVSMVLDISG EEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHEEEEEEEEEECC SMGENNRMTNMRPAAREFVTEVLSANENVNNELLVSVSIVPYNGRVNGGDLIESVFTYDD CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHH LHSESNCTRFAEADFTSTAIDPAVPLQRIAHWDRGNEEEDESFQWAHCQTDQYGAILPWQ HCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCC HTEAALHAHIDSLNTGGWTAIDLGMNWAVGLLDPAAAPALTGLIASGHVHPEFSDRPAPY CHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC RDGDRATTIDDETIKVVVLMTDGDNTRQYDLRDIYDSAGRYVGFREGYAPIFRNTSTGQY CCCCCCEEECCCEEEEEEEEECCCCCCEEHHHHHHHHCCCEEEECCCCCHHHCCCCCCEE SIWWEDQGAFWIPTGNTRDPGGSWQAQPDGGWSRYGMTALEFTEDRANAFDPAEAGNGEV EEEEECCCCEEECCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCE LLWADLFSDHTAGYIAAEWFHAPADESEQWDFYNQLAENPSHNYIGWDSDGVRPDGVVGQ EEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC SQADTNLMAICDVANAAGIIVYAIGFEAPDRGQRVMEHCASVDANYFDVEGREISEAFAS CCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHH IARSINQLRLIQ HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA