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The map label for this gene is appB [H]

Identifier: 89055788

GI number: 89055788

Start: 3350917

End: 3351924

Strand: Direct

Name: appB [H]

Synonym: Jann_3297

Alternate gene names: 89055788

Gene position: 3350917-3351924 (Clockwise)

Preceding gene: 89055787

Following gene: 89055789

Centisome position: 77.6

GC content: 59.62

Gene sequence:

>1008_bases
ATGCTGACCTTCACCATCCGCCGCCTGATCCTTGCGATCCCGACGCTGATCTTTATCAGCTTCATTATTTTCCTGATCGT
GAAGCTCTCGCCCTCGGACCCTACGGCCGGGCTGCCTCTGACGATCCCGCCAGAGGTGCGCGAAGCGATCCGCGAAAGCC
TGGGCGTCAATGATCCGGTCTTCGTGCAATACTTCAAGTGGCTCAAGCTGATGATGTGGGACGAGCCGCTGCACCTGATG
GATGGCTGGTTCGGCACGGAAATGGCGCCGGACGGCCCCCGGATCATCAGCTATCAGACCCGGTCCCCGGTGATGGATCT
GATCATGCAGCGGATGCCGCAGACCCTTTGGGTTGTGGGCACGTCGTATATCGTCGGTATTCTGATCGCCGTGCCGCTGG
GGGTCATCTCGGCCTACCGGCAATATTCGTGGTTCGACCAGATCGGGACGTTTGTCTCGATGATCGGCTTTTCGGTGCCC
ACCTTCTTCACCGGCGTGTTGTTCATCGTCATCTTCGCAGTGAACCTGGGCTGGTTCCCGTCGGTCTATGACACCACGCT
GGAGGTCACCAACTGGGAGACGTTCTGGACCCAGATCCGCCAGATGATCATGCCCGTCATGGTCCTAGGCCTGTTCAACG
CCAGCCAGATCAGCCGCTATATGCGTGCCTCGATGCTCGACAACCTCAATCAGGACTATGTGCGGACCGCGCGGGCCAAG
GGTCTGGGCGAAAGCGTTGTCGTGCTGGTCCACGTGCTGCGCAACTCCATGATCCCGGTCGTGACCGTCATCGCGCTGAA
CGTGCCTGCCGTCTTCGGCGGTGCGATCATCACCGAGCAGGTCTTCAAGGTGAACGGAATCGGCCAGCTGCTGATCATCG
CCATCCAGGCCGGGGACGTACCGGTGGTGCAGACCGTCAGCTTCATCTTCGCGATCCTGATCGTGCTCTTCAACCTGCTC
GCCGATATTCTCTACGGCGTGCTGGACCCCCGCATTCGTTATGATTGA

Upstream 100 bases:

>100_bases
GGGCCTGTCGCTTGGCCGGGGCGGCATAGAAATTGACGGGACACTCACGGTGGACGGGGTGGCTTATGTCCTGTCCGGAC
CGCAGGGATAGGATGAACCC

Downstream 100 bases:

>100_bases
GATCCGCCATGACTGAGACCTCATCCGATATCCAAATCTCCCACGCGCCGCGCAACCAGTGGTGGGATGTCTGGGACCAG
TTCCGCACCCACAAGGGCGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MLTFTIRRLILAIPTLIFISFIIFLIVKLSPSDPTAGLPLTIPPEVREAIRESLGVNDPVFVQYFKWLKLMMWDEPLHLM
DGWFGTEMAPDGPRIISYQTRSPVMDLIMQRMPQTLWVVGTSYIVGILIAVPLGVISAYRQYSWFDQIGTFVSMIGFSVP
TFFTGVLFIVIFAVNLGWFPSVYDTTLEVTNWETFWTQIRQMIMPVMVLGLFNASQISRYMRASMLDNLNQDYVRTARAK
GLGESVVVLVHVLRNSMIPVVTVIALNVPAVFGGAIITEQVFKVNGIGQLLIIAIQAGDVPVVQTVSFIFAILIVLFNLL
ADILYGVLDPRIRYD

Sequences:

>Translated_335_residues
MLTFTIRRLILAIPTLIFISFIIFLIVKLSPSDPTAGLPLTIPPEVREAIRESLGVNDPVFVQYFKWLKLMMWDEPLHLM
DGWFGTEMAPDGPRIISYQTRSPVMDLIMQRMPQTLWVVGTSYIVGILIAVPLGVISAYRQYSWFDQIGTFVSMIGFSVP
TFFTGVLFIVIFAVNLGWFPSVYDTTLEVTNWETFWTQIRQMIMPVMVLGLFNASQISRYMRASMLDNLNQDYVRTARAK
GLGESVVVLVHVLRNSMIPVVTVIALNVPAVFGGAIITEQVFKVNGIGQLLIIAIQAGDVPVVQTVSFIFAILIVLFNLL
ADILYGVLDPRIRYD
>Mature_335_residues
MLTFTIRRLILAIPTLIFISFIIFLIVKLSPSDPTAGLPLTIPPEVREAIRESLGVNDPVFVQYFKWLKLMMWDEPLHLM
DGWFGTEMAPDGPRIISYQTRSPVMDLIMQRMPQTLWVVGTSYIVGILIAVPLGVISAYRQYSWFDQIGTFVSMIGFSVP
TFFTGVLFIVIFAVNLGWFPSVYDTTLEVTNWETFWTQIRQMIMPVMVLGLFNASQISRYMRASMLDNLNQDYVRTARAK
GLGESVVVLVHVLRNSMIPVVTVIALNVPAVFGGAIITEQVFKVNGIGQLLIIAIQAGDVPVVQTVSFIFAILIVLFNLL
ADILYGVLDPRIRYD

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=339, Percent_Identity=35.693215339233, Blast_Score=207, Evalue=9e-55,
Organism=Escherichia coli, GI1789965, Length=357, Percent_Identity=36.6946778711485, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=31.437125748503, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1789888, Length=339, Percent_Identity=31.5634218289086, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1787761, Length=333, Percent_Identity=30.9309309309309, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787550, Length=254, Percent_Identity=25.9842519685039, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788504, Length=382, Percent_Identity=27.7486910994764, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37705; Mature: 37705

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFTIRRLILAIPTLIFISFIIFLIVKLSPSDPTAGLPLTIPPEVREAIRESLGVNDPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHH
FVQYFKWLKLMMWDEPLHLMDGWFGTEMAPDGPRIISYQTRSPVMDLIMQRMPQTLWVVG
HHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHH
TSYIVGILIAVPLGVISAYRQYSWFDQIGTFVSMIGFSVPTFFTGVLFIVIFAVNLGWFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SVYDTTLEVTNWETFWTQIRQMIMPVMVLGLFNASQISRYMRASMLDNLNQDYVRTARAK
CHHHCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHC
GLGESVVVLVHVLRNSMIPVVTVIALNVPAVFGGAIITEQVFKVNGIGQLLIIAIQAGDV
CCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
PVVQTVSFIFAILIVLFNLLADILYGVLDPRIRYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLTFTIRRLILAIPTLIFISFIIFLIVKLSPSDPTAGLPLTIPPEVREAIRESLGVNDPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHH
FVQYFKWLKLMMWDEPLHLMDGWFGTEMAPDGPRIISYQTRSPVMDLIMQRMPQTLWVVG
HHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHH
TSYIVGILIAVPLGVISAYRQYSWFDQIGTFVSMIGFSVPTFFTGVLFIVIFAVNLGWFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SVYDTTLEVTNWETFWTQIRQMIMPVMVLGLFNASQISRYMRASMLDNLNQDYVRTARAK
CHHHCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHC
GLGESVVVLVHVLRNSMIPVVTVIALNVPAVFGGAIITEQVFKVNGIGQLLIIAIQAGDV
CCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
PVVQTVSFIFAILIVLFNLLADILYGVLDPRIRYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]