| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055715
Identifier: 89055715
GI number: 89055715
Start: 3270566
End: 3271564
Strand: Direct
Name: 89055715
Synonym: Jann_3224
Alternate gene names: NA
Gene position: 3270566-3271564 (Clockwise)
Preceding gene: 89055714
Following gene: 89055716
Centisome position: 75.74
GC content: 56.26
Gene sequence:
>999_bases ATGCTTCGAAGCTGTCTTTTTGCTGACGAGGCCTTCAGTTCTGTGCTTTTTTCAAGCAATCCTATTGCTATGGATAAAAA AGTAATTTCGTTTGAGGAATTTCTAGCCCAAGCCAAGGCGTCGGGCGGCGCAGAGTTGGCCAACTGCCACCTCTTCATTG AGCGGTTGTGCCGACACCTCGAATTGCCGGAACCGGCGCTGTCGACAGAAGAGAACCGTCACAACGATTACGTCTTTGAA CGACGGGTTGATTTTAAGCATCCGGACGGTAGCCGGACGCCCGGACGGATTGACCTCTACAAGCGCGATTGCTTCATCTT GGAGGCTAAGCAATCCTCGAAGCGTCCTGCCACGCAAGCATCATTGCCTAGACTGCCGGAAGATCATGCACAAATCAAAC GCGGGCAGGCAGCGCGGGGATCGCGAAGGTGGGACAAGGTAATGGACGCGGCGCGGCGTCAGGCCGAAAACTACGCGCGA GCGCTCCCGGTGGAACACGGTTACCCGCCATTTCTCCTGGTTCTCGATATCGGCAACGAGCTGCAGGTCTTTGCCGACTT TTCGGGCCAAGGCAAAAACTACACGCATTTTCCGGACCGGTCGTCTTTCCGGCTTTCGATGGACGATCTGTTGGAACCCG CCGTCCAAGAGCGGCTGCGGCTCATCTGGACTGATCCTCAAGCCCTCGATCCCGCGCGCTACAGCGCTCAGATCACCCAA GACATTGCCGAACGGTTGGCGCGGATTGCACTGCGCCTTGAACGCAAGCACGACCCCCACGACGTCGCCTCGTTCTTGAT GCGGTGCCTTTTCACGATGTTTGCCGAAGATGTGGAACTGATCCCAGACCACGCCTTTGAAAACCTGCTCGGAAAGATGG TGACCGATCCAAAACCACTTCGTCCCCGCGCTCGAAGACCTCTGGGGCAAGATGGACAAAGGCGGGTACGCAGCGGGCAT CAACAAGACCCTCAAACGGTTCAATGGCTCGCTGTTTAA
Upstream 100 bases:
>100_bases TTCGGCCCTTTGCGGACCTTGATCCCACCTTCAAGATGCTGCGCCGCGGTCCGCCATAGCGGACATTCAATCTGTCTCAC TAGGGCGCAGCACTCGTGTA
Downstream 100 bases:
>100_bases CGACGCCCGCGCCCTCCCACTCGATGAAGACGACATTCGGGAGCTTTGGGTGGCGTCGCAGCGCTCTTGGCAAGATGTGG AACCCGCCATCTTTGGCACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MLRSCLFADEAFSSVLFSSNPIAMDKKVISFEEFLAQAKASGGAELANCHLFIERLCRHLELPEPALSTEENRHNDYVFE RRVDFKHPDGSRTPGRIDLYKRDCFILEAKQSSKRPATQASLPRLPEDHAQIKRGQAARGSRRWDKVMDAARRQAENYAR ALPVEHGYPPFLLVLDIGNELQVFADFSGQGKNYTHFPDRSSFRLSMDDLLEPAVQERLRLIWTDPQALDPARYSAQITQ DIAERLARIALRLERKHDPHDVASFLMRCLFTMFAEDVELIPDHAFENLLGKMVTDPKPLRPRARRPLGQDGQRRVRSGH QQDPQTVQWLAV
Sequences:
>Translated_332_residues MLRSCLFADEAFSSVLFSSNPIAMDKKVISFEEFLAQAKASGGAELANCHLFIERLCRHLELPEPALSTEENRHNDYVFE RRVDFKHPDGSRTPGRIDLYKRDCFILEAKQSSKRPATQASLPRLPEDHAQIKRGQAARGSRRWDKVMDAARRQAENYAR ALPVEHGYPPFLLVLDIGNELQVFADFSGQGKNYTHFPDRSSFRLSMDDLLEPAVQERLRLIWTDPQALDPARYSAQITQ DIAERLARIALRLERKHDPHDVASFLMRCLFTMFAEDVELIPDHAFENLLGKMVTDPKPLRPRARRPLGQDGQRRVRSGH QQDPQTVQWLAV >Mature_332_residues MLRSCLFADEAFSSVLFSSNPIAMDKKVISFEEFLAQAKASGGAELANCHLFIERLCRHLELPEPALSTEENRHNDYVFE RRVDFKHPDGSRTPGRIDLYKRDCFILEAKQSSKRPATQASLPRLPEDHAQIKRGQAARGSRRWDKVMDAARRQAENYAR ALPVEHGYPPFLLVLDIGNELQVFADFSGQGKNYTHFPDRSSFRLSMDDLLEPAVQERLRLIWTDPQALDPARYSAQITQ DIAERLARIALRLERKHDPHDVASFLMRCLFTMFAEDVELIPDHAFENLLGKMVTDPKPLRPRARRPLGQDGQRRVRSGH QQDPQTVQWLAV
Specific function: Unknown
COG id: COG1002
COG function: function code V; Type II restriction enzyme, methylase subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38069; Mature: 38069
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSCLFADEAFSSVLFSSNPIAMDKKVISFEEFLAQAKASGGAELANCHLFIERLCRHL CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC ELPEPALSTEENRHNDYVFERRVDFKHPDGSRTPGRIDLYKRDCFILEAKQSSKRPATQA CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCHHH SLPRLPEDHAQIKRGQAARGSRRWDKVMDAARRQAENYARALPVEHGYPPFLLVLDIGNE CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC LQVFADFSGQGKNYTHFPDRSSFRLSMDDLLEPAVQERLRLIWTDPQALDPARYSAQITQ EEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHH DIAERLARIALRLERKHDPHDVASFLMRCLFTMFAEDVELIPDHAFENLLGKMVTDPKPL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC RPRARRPLGQDGQRRVRSGHQQDPQTVQWLAV CCHHCCCCCCCHHHHHHCCCCCCCCCEEEEEC >Mature Secondary Structure MLRSCLFADEAFSSVLFSSNPIAMDKKVISFEEFLAQAKASGGAELANCHLFIERLCRHL CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC ELPEPALSTEENRHNDYVFERRVDFKHPDGSRTPGRIDLYKRDCFILEAKQSSKRPATQA CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCHHH SLPRLPEDHAQIKRGQAARGSRRWDKVMDAARRQAENYARALPVEHGYPPFLLVLDIGNE CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC LQVFADFSGQGKNYTHFPDRSSFRLSMDDLLEPAVQERLRLIWTDPQALDPARYSAQITQ EEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHH DIAERLARIALRLERKHDPHDVASFLMRCLFTMFAEDVELIPDHAFENLLGKMVTDPKPL HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC RPRARRPLGQDGQRRVRSGHQQDPQTVQWLAV CCHHCCCCCCCHHHHHHCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA