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The map label for this gene is glgB [H]

Identifier: 89055604

GI number: 89055604

Start: 3147769

End: 3149685

Strand: Direct

Name: glgB [H]

Synonym: Jann_3113

Alternate gene names: 89055604

Gene position: 3147769-3149685 (Clockwise)

Preceding gene: 89055602

Following gene: 89055605

Centisome position: 72.9

GC content: 62.34

Gene sequence:

>1917_bases
GTGGCACAGAAGACATCCACACCTCCGCCTGACACAATCCAAGCGGGCGATATGATCACCGACTTTGACCAATACCTTTT
GGGCGAAGGGACGCACCGCCAGCTGTGGCGGGTTCTGGGTGCACATGTGCAAGACGATGCGACGCATTTTGCCGTCTGGG
CGCCCAACGCCCGGGCCGTATCTGTCACTGGTGATTTCAACGGCTGGTCGGGCACCGAGATGACCGCCGTCGGACAGACC
GGCGTCTGGCAGGTGCGCATTCCGGGCGTAGGCGACGGCGCACTCTACAAATACCAGATCACTGACGCCAATGGCGCGCT
GCGCGAGAAGGCGGACCCCGTGGGCTTCGGCGCGCAGCACCCGCCGGAGCAAGCCTCCGTCGTGCGCGATATTCGCGGCT
ATGGCTGGCGCGACGGCGCTTGGATGGAAACCCGTGCTGAGGCGGCTGACCGCGCGGCCCCAATCTCCATCTACGAGGTG
CATCTGGGGTCCTGGCGGCGCAAATGGGACGATGGCGGCAGGCCCCTGTCCTACAAGGAGGCCGCGCAGGATCTGGTGGG
CTACGTGCGCCACATGGGCTTCACCCATATCGAGTTGATGCCGATATCGGAGTTTCCCTTCGACGGGTCCTGGGGCTACC
AGCCCGTGGGCCTTTATGCCCCCACGATCCGCTTCGGCCCGCCGCATGAATTCCGCGATCTGGTGGATGCCGCCCACGCC
GCCGGTCTTGGCGTCCTGCTGGATTGGGTGCCGGGCCATTTCCCGACCGACGAGCATGGGTTGGCGACCTTTGACGGCAC
GCATCTCTATGAACACGCCGACCCGAAAGAGGGCTTCCATCAGGATTGGAACACTCTGATCTTCAACTACGGCCGCACGG
AGGTGCGCAATTACCTCGTCGCCAATGCGCTGTACTGGATGGAGGAATATCACCTCGACGGGCTGCGCGTGGATGCCGTG
GCCTCCATGCTCTACCGCGATTATTCCCGCGATGAGGGGCAGTGGGTCCCCAACAAAGACGGCGGGCGCGAGAACCTTGA
GGCGATTTCCTTCCTGCAGGAGATGAACGTCGCGGTCTACGGCGCGGATGCCAGCGTCATGACGGTGGCCGAAGAAAGCA
CGTCCTTTCCTGGCGTCTCGCAGCCCGTTCATACCGGCGGTCTGGGGTTCGGATACAAGTGGAACATGGGCTGGATGAAC
GACACGCTCAGCTACATGGCGCTTGATCCGATCCACCGCCAGCACCACCATTCCCAGATGACCAACCCGATCATGTGGCA
GTACTCCGAAAACTTTATCCTGCCGATCAGCCATGATGAGGTCGTCCATGGCAAAGGCTCCATGCTGGAAAAAATGCCCG
GCAATGATTGGGAGAAACTTGCCAACCTGCGGGCGTATTACGGCTACATGTGGATGCACCCCGGCAAGAAGCTGATCTTC
ATGGGATGCGAGTTCGCGCAACCCGGGGAATGGTCCCATGACGGCGATCTGAATTGGGACGCGGCCAGCCGACCGGCCCA
TGCGGGCGTGCAAGCATTGGTGCGTGACCTCAACCATCTCTATCGCGACACGCCTGCGCTGCACGTCAAGGATTGTATGC
CAGACGGTTTCGCCTGGATCTGCAACGACCCTGCGCAATCCACCCTCGGGTTCGCGCGCTTCGGGGCCGCGGGTGACGCG
CCCGTGGTGGTCATGTGCAACTTTACACCGGTGGAGCGCGTTGCATTCCGAATGGGCGTGCCCACGCCGGGAGAGTGGGA
CGAAGTTCTCAACACCGACGCAGCCGCCTATGGCGGCGGCAATCGCGGCAATCTGGGTGGGGTTCTGTCTGAGCCGACGC
CCTGCGATGGGCATGCGCAGTCCGTCACGCTGACCCTGCCGCCCTTATCGACAGTCGTTTTGCGGCTGAAAGACTAA

Upstream 100 bases:

>100_bases
AACCTCTCAGCCCCGGGGCGCGTTATCCCCGGGCGGTGGATTTTTGGCCGCGTTAGCGCTATCCGTCACCGGGTGGCGGA
TCGGGAGCAAGGGACATATC

Downstream 100 bases:

>100_bases
CTGACAGGTTCGGGGAGGAACCAGGGATGGAAACGAAACGTTTGACCCAACGCTCCATGGTGTTCGTGCTGGCCGGGGGG
CGGGGCAGTCGGCTGAAAGA

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 638; Mature: 637

Protein sequence:

>638_residues
MAQKTSTPPPDTIQAGDMITDFDQYLLGEGTHRQLWRVLGAHVQDDATHFAVWAPNARAVSVTGDFNGWSGTEMTAVGQT
GVWQVRIPGVGDGALYKYQITDANGALREKADPVGFGAQHPPEQASVVRDIRGYGWRDGAWMETRAEAADRAAPISIYEV
HLGSWRRKWDDGGRPLSYKEAAQDLVGYVRHMGFTHIELMPISEFPFDGSWGYQPVGLYAPTIRFGPPHEFRDLVDAAHA
AGLGVLLDWVPGHFPTDEHGLATFDGTHLYEHADPKEGFHQDWNTLIFNYGRTEVRNYLVANALYWMEEYHLDGLRVDAV
ASMLYRDYSRDEGQWVPNKDGGRENLEAISFLQEMNVAVYGADASVMTVAEESTSFPGVSQPVHTGGLGFGYKWNMGWMN
DTLSYMALDPIHRQHHHSQMTNPIMWQYSENFILPISHDEVVHGKGSMLEKMPGNDWEKLANLRAYYGYMWMHPGKKLIF
MGCEFAQPGEWSHDGDLNWDAASRPAHAGVQALVRDLNHLYRDTPALHVKDCMPDGFAWICNDPAQSTLGFARFGAAGDA
PVVVMCNFTPVERVAFRMGVPTPGEWDEVLNTDAAAYGGGNRGNLGGVLSEPTPCDGHAQSVTLTLPPLSTVVLRLKD

Sequences:

>Translated_638_residues
MAQKTSTPPPDTIQAGDMITDFDQYLLGEGTHRQLWRVLGAHVQDDATHFAVWAPNARAVSVTGDFNGWSGTEMTAVGQT
GVWQVRIPGVGDGALYKYQITDANGALREKADPVGFGAQHPPEQASVVRDIRGYGWRDGAWMETRAEAADRAAPISIYEV
HLGSWRRKWDDGGRPLSYKEAAQDLVGYVRHMGFTHIELMPISEFPFDGSWGYQPVGLYAPTIRFGPPHEFRDLVDAAHA
AGLGVLLDWVPGHFPTDEHGLATFDGTHLYEHADPKEGFHQDWNTLIFNYGRTEVRNYLVANALYWMEEYHLDGLRVDAV
ASMLYRDYSRDEGQWVPNKDGGRENLEAISFLQEMNVAVYGADASVMTVAEESTSFPGVSQPVHTGGLGFGYKWNMGWMN
DTLSYMALDPIHRQHHHSQMTNPIMWQYSENFILPISHDEVVHGKGSMLEKMPGNDWEKLANLRAYYGYMWMHPGKKLIF
MGCEFAQPGEWSHDGDLNWDAASRPAHAGVQALVRDLNHLYRDTPALHVKDCMPDGFAWICNDPAQSTLGFARFGAAGDA
PVVVMCNFTPVERVAFRMGVPTPGEWDEVLNTDAAAYGGGNRGNLGGVLSEPTPCDGHAQSVTLTLPPLSTVVLRLKD
>Mature_637_residues
AQKTSTPPPDTIQAGDMITDFDQYLLGEGTHRQLWRVLGAHVQDDATHFAVWAPNARAVSVTGDFNGWSGTEMTAVGQTG
VWQVRIPGVGDGALYKYQITDANGALREKADPVGFGAQHPPEQASVVRDIRGYGWRDGAWMETRAEAADRAAPISIYEVH
LGSWRRKWDDGGRPLSYKEAAQDLVGYVRHMGFTHIELMPISEFPFDGSWGYQPVGLYAPTIRFGPPHEFRDLVDAAHAA
GLGVLLDWVPGHFPTDEHGLATFDGTHLYEHADPKEGFHQDWNTLIFNYGRTEVRNYLVANALYWMEEYHLDGLRVDAVA
SMLYRDYSRDEGQWVPNKDGGRENLEAISFLQEMNVAVYGADASVMTVAEESTSFPGVSQPVHTGGLGFGYKWNMGWMND
TLSYMALDPIHRQHHHSQMTNPIMWQYSENFILPISHDEVVHGKGSMLEKMPGNDWEKLANLRAYYGYMWMHPGKKLIFM
GCEFAQPGEWSHDGDLNWDAASRPAHAGVQALVRDLNHLYRDTPALHVKDCMPDGFAWICNDPAQSTLGFARFGAAGDAP
VVVMCNFTPVERVAFRMGVPTPGEWDEVLNTDAAAYGGGNRGNLGGVLSEPTPCDGHAQSVTLTLPPLSTVVLRLKD

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=655, Percent_Identity=26.7175572519084, Blast_Score=179, Evalue=9e-45,
Organism=Escherichia coli, GI1789839, Length=633, Percent_Identity=55.9241706161137, Blast_Score=698, Evalue=0.0,
Organism=Escherichia coli, GI2367229, Length=162, Percent_Identity=30.8641975308642, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17554896, Length=654, Percent_Identity=25.2293577981651, Blast_Score=172, Evalue=4e-43,
Organism=Caenorhabditis elegans, GI32564391, Length=609, Percent_Identity=24.9589490968801, Blast_Score=153, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6320826, Length=674, Percent_Identity=25.6676557863501, Blast_Score=161, Evalue=3e-40,
Organism=Drosophila melanogaster, GI28573410, Length=658, Percent_Identity=26.4437689969605, Blast_Score=181, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 70837; Mature: 70706

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKTSTPPPDTIQAGDMITDFDQYLLGEGTHRQLWRVLGAHVQDDATHFAVWAPNARAV
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCCEEE
SVTGDFNGWSGTEMTAVGQTGVWQVRIPGVGDGALYKYQITDANGALREKADPVGFGAQH
EEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCHHHCCCCCCCCCCC
PPEQASVVRDIRGYGWRDGAWMETRAEAADRAAPISIYEVHLGSWRRKWDDGGRPLSYKE
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCHHH
AAQDLVGYVRHMGFTHIELMPISEFPFDGSWGYQPVGLYAPTIRFGPPHEFRDLVDAAHA
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECEECCEECCCCCHHHHHHHHHHHH
AGLGVLLDWVPGHFPTDEHGLATFDGTHLYEHADPKEGFHQDWNTLIFNYGRTEVRNYLV
CCHHHHEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCEEEECCHHHHHHHHH
ANALYWMEEYHLDGLRVDAVASMLYRDYSRDEGQWVPNKDGGRENLEAISFLQEMNVAVY
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEE
GADASVMTVAEESTSFPGVSQPVHTGGLGFGYKWNMGWMNDTLSYMALDPIHRQHHHSQM
ECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCHHHHCCCHHHHHHHHHHC
TNPIMWQYSENFILPISHDEVVHGKGSMLEKMPGNDWEKLANLRAYYGYMWMHPGKKLIF
CCCEEEEECCCEEEEECCCCEECCCCHHHHCCCCCHHHHHHHHHHHHCEEEECCCCEEEE
MGCEFAQPGEWSHDGDLNWDAASRPAHAGVQALVRDLNHLYRDTPALHVKDCMPDGFAWI
EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCEEE
CNDPAQSTLGFARFGAAGDAPVVVMCNFTPVERVAFRMGVPTPGEWDEVLNTDAAAYGGG
ECCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCHHHHHCCCCHHCCCC
NRGNLGGVLSEPTPCDGHAQSVTLTLPPLSTVVLRLKD
CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC
>Mature Secondary Structure 
AQKTSTPPPDTIQAGDMITDFDQYLLGEGTHRQLWRVLGAHVQDDATHFAVWAPNARAV
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCCEEE
SVTGDFNGWSGTEMTAVGQTGVWQVRIPGVGDGALYKYQITDANGALREKADPVGFGAQH
EEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCHHHCCCCCCCCCCC
PPEQASVVRDIRGYGWRDGAWMETRAEAADRAAPISIYEVHLGSWRRKWDDGGRPLSYKE
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCHHH
AAQDLVGYVRHMGFTHIELMPISEFPFDGSWGYQPVGLYAPTIRFGPPHEFRDLVDAAHA
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECEECCEECCCCCHHHHHHHHHHHH
AGLGVLLDWVPGHFPTDEHGLATFDGTHLYEHADPKEGFHQDWNTLIFNYGRTEVRNYLV
CCHHHHEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCEEEECCHHHHHHHHH
ANALYWMEEYHLDGLRVDAVASMLYRDYSRDEGQWVPNKDGGRENLEAISFLQEMNVAVY
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEE
GADASVMTVAEESTSFPGVSQPVHTGGLGFGYKWNMGWMNDTLSYMALDPIHRQHHHSQM
ECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCHHHHCCCHHHHHHHHHHC
TNPIMWQYSENFILPISHDEVVHGKGSMLEKMPGNDWEKLANLRAYYGYMWMHPGKKLIF
CCCEEEEECCCEEEEECCCCEECCCCHHHHCCCCCHHHHHHHHHHHHCEEEECCCCEEEE
MGCEFAQPGEWSHDGDLNWDAASRPAHAGVQALVRDLNHLYRDTPALHVKDCMPDGFAWI
EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCEEE
CNDPAQSTLGFARFGAAGDAPVVVMCNFTPVERVAFRMGVPTPGEWDEVLNTDAAAYGGG
ECCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCHHHHHCCCCHHCCCC
NRGNLGGVLSEPTPCDGHAQSVTLTLPPLSTVVLRLKD
CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA