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The map label for this gene is msmR [H]

Identifier: 89055586

GI number: 89055586

Start: 3131159

End: 3132100

Strand: Direct

Name: msmR [H]

Synonym: Jann_3095

Alternate gene names: 89055586

Gene position: 3131159-3132100 (Clockwise)

Preceding gene: 89055582

Following gene: 89055589

Centisome position: 72.51

GC content: 58.28

Gene sequence:

>942_bases
ATGTGGCGCCACGCGCATTCTGCCGGAATGACCGTCCAACCGAACAATTACTTCAGCTATATCCCTGAAAGTCGTCTGTG
CCATGCGCTGGGTTGCACGTTGCAGTCGGCCGGGTTCACGCAAGTTGCCCCTTATGCGGTCTATCCGGCGGGCACCCATC
CAAAAGACCACCTCTTCAGCAAGACCCGGGGACGGGTTTTGCAGGCCTATCAGATCGTATTCATCTCCAAGGGGCGTGGC
AGGGTGGAGCTGGGAAGTGGCCGCAAGGCGCAAGAGATACATGCGGGCCAGGTCTTCGTCCTGTTCCCGAATGTGTGGCA
CCGCTACGCGCCAGAACCTTCGGTGGGCTGGACTGAGCATTGGGTCGAATGCAAGGGAACCGCCTTCGACATGTCCTTGA
ATGCGGGTTTGCTGGATCCCGGTCGCCCCATCATTCGACATCCCAATTTTGAAGCAGTGCACGACACGTTTGCTGAAATC
CACGGGCTTGCCGGGACGGATGCCGTCGGCAACCAGCCGGTTCTCTCCATGCTAAGTCTGAAGCTGTTGGCCATTCTTGC
CGGGCCCCGCAACGCGAATGAAGACAGCACCAATCGTCTGGTGAACTCTGCCCGCATGATATTGCTTGAACATTGCACCG
GGCAGCGTCCGATGGAGGATATCGCGGATGAGTTGAACGTCAGCTATTCCACCCTGCGCCGCACGTTCCGGGTGCAAACG
GGGATGTCGATGAAGGATTACCAGATGGCGATGAGAATTCAGAAGGCCAAGGACCTGCTCGACAATACAGAATTGTCGGT
CAAGGGGGTGGCCGGACAGCTTGGGTTCAGCTCTGCATTTCACTTTTCAAGTCAGTTCAGGAAGACCGTCGGGTGCCCGC
CATCGGACTGGCGGGCACGCCTCGGGCAGGGAGGGGAGGCCCCCTTTAGCACACGCGAATAA

Upstream 100 bases:

>100_bases
CAACCCGACAGCGTCGATCTTCCGAAATACGAACATTTTCAGTATGTTGTGGTGAAATCGTTCTCATCCACCCCACCAGA
ACGCATATCTTAGTTGATTT

Downstream 100 bases:

>100_bases
CCTCAAGCCCCAGCAGCGCCCCAAGTTTTTCAATTCGGGTCGCGATATGACCGACACCCACAGCACAATGGTGCGCCGGT
GCGGCCGCATTCCAGGCCTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MWRHAHSAGMTVQPNNYFSYIPESRLCHALGCTLQSAGFTQVAPYAVYPAGTHPKDHLFSKTRGRVLQAYQIVFISKGRG
RVELGSGRKAQEIHAGQVFVLFPNVWHRYAPEPSVGWTEHWVECKGTAFDMSLNAGLLDPGRPIIRHPNFEAVHDTFAEI
HGLAGTDAVGNQPVLSMLSLKLLAILAGPRNANEDSTNRLVNSARMILLEHCTGQRPMEDIADELNVSYSTLRRTFRVQT
GMSMKDYQMAMRIQKAKDLLDNTELSVKGVAGQLGFSSAFHFSSQFRKTVGCPPSDWRARLGQGGEAPFSTRE

Sequences:

>Translated_313_residues
MWRHAHSAGMTVQPNNYFSYIPESRLCHALGCTLQSAGFTQVAPYAVYPAGTHPKDHLFSKTRGRVLQAYQIVFISKGRG
RVELGSGRKAQEIHAGQVFVLFPNVWHRYAPEPSVGWTEHWVECKGTAFDMSLNAGLLDPGRPIIRHPNFEAVHDTFAEI
HGLAGTDAVGNQPVLSMLSLKLLAILAGPRNANEDSTNRLVNSARMILLEHCTGQRPMEDIADELNVSYSTLRRTFRVQT
GMSMKDYQMAMRIQKAKDLLDNTELSVKGVAGQLGFSSAFHFSSQFRKTVGCPPSDWRARLGQGGEAPFSTRE
>Mature_313_residues
MWRHAHSAGMTVQPNNYFSYIPESRLCHALGCTLQSAGFTQVAPYAVYPAGTHPKDHLFSKTRGRVLQAYQIVFISKGRG
RVELGSGRKAQEIHAGQVFVLFPNVWHRYAPEPSVGWTEHWVECKGTAFDMSLNAGLLDPGRPIIRHPNFEAVHDTFAEI
HGLAGTDAVGNQPVLSMLSLKLLAILAGPRNANEDSTNRLVNSARMILLEHCTGQRPMEDIADELNVSYSTLRRTFRVQT
GMSMKDYQMAMRIQKAKDLLDNTELSVKGVAGQLGFSSAFHFSSQFRKTVGCPPSDWRARLGQGGEAPFSTRE

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=105, Percent_Identity=35.2380952380952, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786251, Length=248, Percent_Identity=23.7903225806452, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34714; Mature: 34714

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRHAHSAGMTVQPNNYFSYIPESRLCHALGCTLQSAGFTQVAPYAVYPAGTHPKDHLFS
CCCCCCCCCCEECCCCCEECCCHHHHHHHHCCHHCCCCCCEECCEEEECCCCCCHHHHHH
KTRGRVLQAYQIVFISKGRGRVELGSGRKAQEIHAGQVFVLFPNVWHRYAPEPSVGWTEH
HHHHHHEEEEEEEEEECCCCEEEECCCCCCCEECCCEEEEECCHHHHHCCCCCCCCCHHH
WVECKGTAFDMSLNAGLLDPGRPIIRHPNFEAVHDTFAEIHGLAGTDAVGNQPVLSMLSL
HHEECCCEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KLLAILAGPRNANEDSTNRLVNSARMILLEHCTGQRPMEDIADELNVSYSTLRRTFRVQT
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHC
GMSMKDYQMAMRIQKAKDLLDNTELSVKGVAGQLGFSSAFHFSSQFRKTVGCPPSDWRAR
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
LGQGGEAPFSTRE
HCCCCCCCCCCCC
>Mature Secondary Structure
MWRHAHSAGMTVQPNNYFSYIPESRLCHALGCTLQSAGFTQVAPYAVYPAGTHPKDHLFS
CCCCCCCCCCEECCCCCEECCCHHHHHHHHCCHHCCCCCCEECCEEEECCCCCCHHHHHH
KTRGRVLQAYQIVFISKGRGRVELGSGRKAQEIHAGQVFVLFPNVWHRYAPEPSVGWTEH
HHHHHHEEEEEEEEEECCCCEEEECCCCCCCEECCCEEEEECCHHHHHCCCCCCCCCHHH
WVECKGTAFDMSLNAGLLDPGRPIIRHPNFEAVHDTFAEIHGLAGTDAVGNQPVLSMLSL
HHEECCCEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KLLAILAGPRNANEDSTNRLVNSARMILLEHCTGQRPMEDIADELNVSYSTLRRTFRVQT
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHC
GMSMKDYQMAMRIQKAKDLLDNTELSVKGVAGQLGFSSAFHFSSQFRKTVGCPPSDWRAR
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
LGQGGEAPFSTRE
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]