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The map label for this gene is rbsR [H]

Identifier: 89055582

GI number: 89055582

Start: 3126146

End: 3127132

Strand: Direct

Name: rbsR [H]

Synonym: Jann_3091

Alternate gene names: 89055582

Gene position: 3126146-3127132 (Clockwise)

Preceding gene: 89055581

Following gene: 89055586

Centisome position: 72.4

GC content: 62.92

Gene sequence:

>987_bases
ATGCCGACAGTCAAAGATGTAGCCCGTCACGCTGGTGTGTCCGTCGGGACCGTCTCCAAGGTTTTGTCGCGCGACGATAC
CGTCAAAGAGGCGCTGCGGGACCGTGTCCTGTCCGCCGTCACGGACCTGGGCTACAAACCCAACATGGCGGCGCGCGCCC
TGCGCACCAAGAAGGTCAATATCATCGGTCTGGTCGTGCCTGACATCACCAACCCGTTTTTTGCGAACCTTGCCAAAGAT
ATCGAAATGCTGGCGTCTGCGCGGGGCCATACGGTCATGTTGACAAACTCCCACGACGACGCCCCTACCGAAAAGCGCCA
GATAGAGGCGCTGCTGGATCAAAACCCCAGCGGCCTGATCGTCGTGGCGTCCAGTGACGCAAGCGGCATCATGCTGGACG
GTCAGGTGCCGGTCATTTCCATCGACCGCCGTCTGGGTGCGTTCCCCCTCGTGGCAACCGACCATGCCGACGGCTCTGCC
AAGATCGCCGAGCATCTGGTTCATCTTGGGCACCGGCGCATCGCCTACCTCGCCGGGCCCCAGAACACCGAGGTGGGTCG
CCTGCGCCTTGCCGGATTTGAACGGGCGATTGCGACCCTTGAGGCGCACCACGAGGGCCTCAGGGTGACCAAGTTGTCCG
GCAACTTTGACTATCAGACCGGCGAGACCCTGGCGCGGGATCTGCTGATCCGCCCGGTCGAAGATCGCCCGACGGCCATT
GCAGCAGCCAGCGATCAGATGGCCATTGGTGTCCTTCGGGCCGCCAATGACATGGGACTTTCGGTTCCGGGCGACGTCTC
ACTTGCGGGTTTCGATAACGTCGCCCTGGCCGAACTTGTCGTGCCCCGACTGACGACAATCGCCCAACCGACCCGGGCCT
TGGCCGAGGCTGCAATCGGTCAATTGCTGGACCGCCCATCGGCTGACATGACGGATGAGGTGATCTCGGGCACACTCGTT
GCCCGTGGCTCCACCGCCGCCGTGTGA

Upstream 100 bases:

>100_bases
ACAGAACCTTCTTGACGGGCTGGCAGTTGCTTGATTGATCCAGTCGAAACTGCGAGGTGGCCTTAACACCACGTCCTCCC
CTGACTTTTTTGGAAACCGG

Downstream 100 bases:

>100_bases
CGCAAGATCTCGGGCGTCTGTCACGCCATGCGCTGTCGCACGCCGTCAAAGCCCACCGCCAGGATCAGAACGACACCCCG
GGTCACATCCTGCCAGAAGC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MPTVKDVARHAGVSVGTVSKVLSRDDTVKEALRDRVLSAVTDLGYKPNMAARALRTKKVNIIGLVVPDITNPFFANLAKD
IEMLASARGHTVMLTNSHDDAPTEKRQIEALLDQNPSGLIVVASSDASGIMLDGQVPVISIDRRLGAFPLVATDHADGSA
KIAEHLVHLGHRRIAYLAGPQNTEVGRLRLAGFERAIATLEAHHEGLRVTKLSGNFDYQTGETLARDLLIRPVEDRPTAI
AAASDQMAIGVLRAANDMGLSVPGDVSLAGFDNVALAELVVPRLTTIAQPTRALAEAAIGQLLDRPSADMTDEVISGTLV
ARGSTAAV

Sequences:

>Translated_328_residues
MPTVKDVARHAGVSVGTVSKVLSRDDTVKEALRDRVLSAVTDLGYKPNMAARALRTKKVNIIGLVVPDITNPFFANLAKD
IEMLASARGHTVMLTNSHDDAPTEKRQIEALLDQNPSGLIVVASSDASGIMLDGQVPVISIDRRLGAFPLVATDHADGSA
KIAEHLVHLGHRRIAYLAGPQNTEVGRLRLAGFERAIATLEAHHEGLRVTKLSGNFDYQTGETLARDLLIRPVEDRPTAI
AAASDQMAIGVLRAANDMGLSVPGDVSLAGFDNVALAELVVPRLTTIAQPTRALAEAAIGQLLDRPSADMTDEVISGTLV
ARGSTAAV
>Mature_327_residues
PTVKDVARHAGVSVGTVSKVLSRDDTVKEALRDRVLSAVTDLGYKPNMAARALRTKKVNIIGLVVPDITNPFFANLAKDI
EMLASARGHTVMLTNSHDDAPTEKRQIEALLDQNPSGLIVVASSDASGIMLDGQVPVISIDRRLGAFPLVATDHADGSAK
IAEHLVHLGHRRIAYLAGPQNTEVGRLRLAGFERAIATLEAHHEGLRVTKLSGNFDYQTGETLARDLLIRPVEDRPTAIA
AASDQMAIGVLRAANDMGLSVPGDVSLAGFDNVALAELVVPRLTTIAQPTRALAEAAIGQLLDRPSADMTDEVISGTLVA
RGSTAAV

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=344, Percent_Identity=32.5581395348837, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789202, Length=335, Percent_Identity=36.7164179104478, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI1787948, Length=312, Percent_Identity=33.974358974359, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1790369, Length=335, Percent_Identity=31.6417910447761, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1788474, Length=303, Percent_Identity=33.6633663366337, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1789068, Length=314, Percent_Identity=31.2101910828025, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1786540, Length=343, Percent_Identity=30.0291545189504, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787580, Length=317, Percent_Identity=29.6529968454259, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI48994940, Length=317, Percent_Identity=27.1293375394322, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789456, Length=304, Percent_Identity=29.6052631578947, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787906, Length=197, Percent_Identity=32.994923857868, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786268, Length=304, Percent_Identity=27.6315789473684, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790715, Length=333, Percent_Identity=22.8228228228228, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790689, Length=313, Percent_Identity=26.517571884984, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34714; Mature: 34583

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTVKDVARHAGVSVGTVSKVLSRDDTVKEALRDRVLSAVTDLGYKPNMAARALRTKKVN
CCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEE
IIGLVVPDITNPFFANLAKDIEMLASARGHTVMLTNSHDDAPTEKRQIEALLDQNPSGLI
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
VVASSDASGIMLDGQVPVISIDRRLGAFPLVATDHADGSAKIAEHLVHLGHRRIAYLAGP
EEEECCCCCEEEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECC
QNTEVGRLRLAGFERAIATLEAHHEGLRVTKLSGNFDYQTGETLARDLLIRPVEDRPTAI
CCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEE
AAASDQMAIGVLRAANDMGLSVPGDVSLAGFDNVALAELVVPRLTTIAQPTRALAEAAIG
EECCCCHHHHHEEHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLDRPSADMTDEVISGTLVARGSTAAV
HHHCCCCCCCHHHHHCCEEEECCCCCCC
>Mature Secondary Structure 
PTVKDVARHAGVSVGTVSKVLSRDDTVKEALRDRVLSAVTDLGYKPNMAARALRTKKVN
CCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEE
IIGLVVPDITNPFFANLAKDIEMLASARGHTVMLTNSHDDAPTEKRQIEALLDQNPSGLI
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
VVASSDASGIMLDGQVPVISIDRRLGAFPLVATDHADGSAKIAEHLVHLGHRRIAYLAGP
EEEECCCCCEEEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECC
QNTEVGRLRLAGFERAIATLEAHHEGLRVTKLSGNFDYQTGETLARDLLIRPVEDRPTAI
CCCCCCEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEE
AAASDQMAIGVLRAANDMGLSVPGDVSLAGFDNVALAELVVPRLTTIAQPTRALAEAAIG
EECCCCHHHHHEEHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLDRPSADMTDEVISGTLVARGSTAAV
HHHCCCCCCCHHHHHCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]