| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055552
Identifier: 89055552
GI number: 89055552
Start: 3093427
End: 3095220
Strand: Direct
Name: 89055552
Synonym: Jann_3061
Alternate gene names: NA
Gene position: 3093427-3095220 (Clockwise)
Preceding gene: 89055546
Following gene: 89055553
Centisome position: 71.64
GC content: 64.33
Gene sequence:
>1794_bases ATGGCAATACCTGCGCCGGCCAATATGGTCTTGCAAAATTTCATAACGGTCTTCCTCCCTAGTTGGCGGGCCGGTCAAAT TACGACTTGGCCTACTCATCAACTTATCATACCAGTAGAACATCCGCGCAAGCCTTTCATTCGCCAAGACAGCAAAAAGA GGACCCATCAAGGCATGAAGGATGAGATTTTTCAGGTCGGCGAACTCACCTATCGGTTGCAGGATGGATGTCTGCGGAGC CTTTCCTGGAAAGGCTTTGAGGCGGTTCGCGGCCTGTCCGCGGCGATCCGGGACACGGCCTGGGGCACCCTGCCCGAAGA CGCGATGCCGTGGCACCACGAGACCGGACCTGGCCGGGCTTCTCATGTCCGGACCTTTGCCGTTCAGGACGGAGCCGTGA CCGGAAAACTGCGAATCGCGGCACATGCGAACGGCCGATTGGAGGCGGATCTGAGCCTGACTGCGCACACTGAATTCAGG ACGAACCGCGCCGGATTTTGCCTGCTGCACCCGCTGCGTGGCGTCGTGGGCCAGCCCTTCACCGCAACGTCTCCGGACGG AACCGACCAGAACCTGATGTTCCCCGAGCGCATTTCGCCCGGGCAGCCGGCGCTGAACCTCGCGGGTCTTCGGCACACCG TTCAAGGTGTCGACGTCGACATTGCGATGGAGGGCGAGGTGTTTGAAATGGAGGACCAGCGCAATTGGTCAGACGCGTCG TTCAAGACATATTGCCGACCGCTGTCAAAACCGCTGCCCCAGGTGATCGCTGCGGGCGAAACCATTCATCAGCGCGTCGT CATCCAGCTGTCGGGTGATCCGGTAGATAGCACAACGCCGGTTGACGAACAGTCGACAGTCACGATGCCGGAAGTCCTGA TTGCCGTAGAGCCGGATTGGCTGCCCGCGGGTCCCCTGCACGGCAATGCCGCCCTTGTCAGGTGGGCGCCCGACGCGGCA TGGACGGCGGCGACGCTTGCACGGCTTGGCACAGCACTCGGCCATCGACCGCTGGATCTGGAAATCGTCATCCCTGAAGG CTCCCACCCCGAGGACGTTGTGGATGGGGTCGCAGCGGATCTGGCCGAGGCGGGCCTTACTGCGCGGCACGTCATCGCGC TGCCTGCTGCCTACCTGCAAAGCCATCAGCCGACAGGGCCTTGGCCAGACGGCCCCACACCTGAGCAGGCGCGGGACGCC GCACGCGCCGCCTTTCCCCACGCGCGGATCGGCACAGGTATGCTGACCAATTTCACGGAGTTGAACCGCCGCCCGCCGGA CGGAGGCGACTACATCACCCACGCAAACAGCGCTATCGTTCATGCCGCCGACGACGGGTCCGTTCTGGAAACGCTGGAGG CTATCCCGGACGTTTGCGCCTCAGCCGCCGCCATCGCCGGGGACAGGCCGCTGCGGCTGGGCCTGATGGCCATCGGGATG CGCTCGAACCCCTACGGCGTCGGGCTGGTGCCCAACCCCGGTGGCGCACGGATCACGATGACCGACAGCGACCCCCGCCA GAGCGCGCCCTTCGCCGCAGCCTATGCAACGGCTGTCTGCGCCCTTGCGGCGCGCGCCGGGATCGAGGCGGTAACGCTCG CCGCCGCCGCCGGACCCCTGGGCGCAGAGGGACGGCCAATCGGCAGAACCATTGATGCGCTCGCCGCCCTGGCGGGCCAA AAAGCGCGTATCACTGGAACGCCACCCGGTCCCCTGCGCATCGAAGCAAGCGGCGATGTCATATCCCTTGATGCGGCGGA CGCGGCCCCGAAACTAGAAGGTTTCTCCCCATGA
Upstream 100 bases:
>100_bases CGCCGCATGTCCCGCGACCCAGAATTCGGTTTCGAGCGTCTGATACGCAAAACAGATCGTCAGATCTTCGTTCTGCGCAA AGGCCGGTGCGGCCAGGCCG
Downstream 100 bases:
>100_bases AAACCATGAATGGTGCCCTGATCGGATGCGGCTTCTTCGCTGAAAATCATATGCATGCCTGGGCCGGGTTAGAGGGTGCG CGGATCGTGGCGCTGTGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 597; Mature: 596
Protein sequence:
>597_residues MAIPAPANMVLQNFITVFLPSWRAGQITTWPTHQLIIPVEHPRKPFIRQDSKKRTHQGMKDEIFQVGELTYRLQDGCLRS LSWKGFEAVRGLSAAIRDTAWGTLPEDAMPWHHETGPGRASHVRTFAVQDGAVTGKLRIAAHANGRLEADLSLTAHTEFR TNRAGFCLLHPLRGVVGQPFTATSPDGTDQNLMFPERISPGQPALNLAGLRHTVQGVDVDIAMEGEVFEMEDQRNWSDAS FKTYCRPLSKPLPQVIAAGETIHQRVVIQLSGDPVDSTTPVDEQSTVTMPEVLIAVEPDWLPAGPLHGNAALVRWAPDAA WTAATLARLGTALGHRPLDLEIVIPEGSHPEDVVDGVAADLAEAGLTARHVIALPAAYLQSHQPTGPWPDGPTPEQARDA ARAAFPHARIGTGMLTNFTELNRRPPDGGDYITHANSAIVHAADDGSVLETLEAIPDVCASAAAIAGDRPLRLGLMAIGM RSNPYGVGLVPNPGGARITMTDSDPRQSAPFAAAYATAVCALAARAGIEAVTLAAAAGPLGAEGRPIGRTIDALAALAGQ KARITGTPPGPLRIEASGDVISLDAADAAPKLEGFSP
Sequences:
>Translated_597_residues MAIPAPANMVLQNFITVFLPSWRAGQITTWPTHQLIIPVEHPRKPFIRQDSKKRTHQGMKDEIFQVGELTYRLQDGCLRS LSWKGFEAVRGLSAAIRDTAWGTLPEDAMPWHHETGPGRASHVRTFAVQDGAVTGKLRIAAHANGRLEADLSLTAHTEFR TNRAGFCLLHPLRGVVGQPFTATSPDGTDQNLMFPERISPGQPALNLAGLRHTVQGVDVDIAMEGEVFEMEDQRNWSDAS FKTYCRPLSKPLPQVIAAGETIHQRVVIQLSGDPVDSTTPVDEQSTVTMPEVLIAVEPDWLPAGPLHGNAALVRWAPDAA WTAATLARLGTALGHRPLDLEIVIPEGSHPEDVVDGVAADLAEAGLTARHVIALPAAYLQSHQPTGPWPDGPTPEQARDA ARAAFPHARIGTGMLTNFTELNRRPPDGGDYITHANSAIVHAADDGSVLETLEAIPDVCASAAAIAGDRPLRLGLMAIGM RSNPYGVGLVPNPGGARITMTDSDPRQSAPFAAAYATAVCALAARAGIEAVTLAAAAGPLGAEGRPIGRTIDALAALAGQ KARITGTPPGPLRIEASGDVISLDAADAAPKLEGFSP >Mature_596_residues AIPAPANMVLQNFITVFLPSWRAGQITTWPTHQLIIPVEHPRKPFIRQDSKKRTHQGMKDEIFQVGELTYRLQDGCLRSL SWKGFEAVRGLSAAIRDTAWGTLPEDAMPWHHETGPGRASHVRTFAVQDGAVTGKLRIAAHANGRLEADLSLTAHTEFRT NRAGFCLLHPLRGVVGQPFTATSPDGTDQNLMFPERISPGQPALNLAGLRHTVQGVDVDIAMEGEVFEMEDQRNWSDASF KTYCRPLSKPLPQVIAAGETIHQRVVIQLSGDPVDSTTPVDEQSTVTMPEVLIAVEPDWLPAGPLHGNAALVRWAPDAAW TAATLARLGTALGHRPLDLEIVIPEGSHPEDVVDGVAADLAEAGLTARHVIALPAAYLQSHQPTGPWPDGPTPEQARDAA RAAFPHARIGTGMLTNFTELNRRPPDGGDYITHANSAIVHAADDGSVLETLEAIPDVCASAAAIAGDRPLRLGLMAIGMR SNPYGVGLVPNPGGARITMTDSDPRQSAPFAAAYATAVCALAARAGIEAVTLAAAAGPLGAEGRPIGRTIDALAALAGQK ARITGTPPGPLRIEASGDVISLDAADAAPKLEGFSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63273; Mature: 63142
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIPAPANMVLQNFITVFLPSWRAGQITTWPTHQLIIPVEHPRKPFIRQDSKKRTHQGMK CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHCCHH DEIFQVGELTYRLQDGCLRSLSWKGFEAVRGLSAAIRDTAWGTLPEDAMPWHHETGPGRA HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH SHVRTFAVQDGAVTGKLRIAAHANGRLEADLSLTAHTEFRTNRAGFCLLHPLRGVVGQPF HHEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCEEEEEHHHHHCCCCC TATSPDGTDQNLMFPERISPGQPALNLAGLRHTVQGVDVDIAMEGEVFEMEDQRNWSDAS CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCH FKTYCRPLSKPLPQVIAAGETIHQRVVIQLSGDPVDSTTPVDEQSTVTMPEVLIAVEPDW HHHHHHHHCCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCEEEEEECCCC LPAGPLHGNAALVRWAPDAAWTAATLARLGTALGHRPLDLEIVIPEGSHPEDVVDGVAAD CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH LAEAGLTARHVIALPAAYLQSHQPTGPWPDGPTPEQARDAARAAFPHARIGTGMLTNFTE HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHH LNRRPPDGGDYITHANSAIVHAADDGSVLETLEAIPDVCASAAAIAGDRPLRLGLMAIGM HCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC RSNPYGVGLVPNPGGARITMTDSDPRQSAPFAAAYATAVCALAARAGIEAVTLAAAAGPL CCCCEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHCCCC GAEGRPIGRTIDALAALAGQKARITGTPPGPLRIEASGDVISLDAADAAPKLEGFSP CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure AIPAPANMVLQNFITVFLPSWRAGQITTWPTHQLIIPVEHPRKPFIRQDSKKRTHQGMK CCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHCCHH DEIFQVGELTYRLQDGCLRSLSWKGFEAVRGLSAAIRDTAWGTLPEDAMPWHHETGPGRA HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH SHVRTFAVQDGAVTGKLRIAAHANGRLEADLSLTAHTEFRTNRAGFCLLHPLRGVVGQPF HHEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCEEEEEHHHHHCCCCC TATSPDGTDQNLMFPERISPGQPALNLAGLRHTVQGVDVDIAMEGEVFEMEDQRNWSDAS CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCH FKTYCRPLSKPLPQVIAAGETIHQRVVIQLSGDPVDSTTPVDEQSTVTMPEVLIAVEPDW HHHHHHHHCCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCEEEEEECCCC LPAGPLHGNAALVRWAPDAAWTAATLARLGTALGHRPLDLEIVIPEGSHPEDVVDGVAAD CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH LAEAGLTARHVIALPAAYLQSHQPTGPWPDGPTPEQARDAARAAFPHARIGTGMLTNFTE HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHH LNRRPPDGGDYITHANSAIVHAADDGSVLETLEAIPDVCASAAAIAGDRPLRLGLMAIGM HCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC RSNPYGVGLVPNPGGARITMTDSDPRQSAPFAAAYATAVCALAARAGIEAVTLAAAAGPL CCCCEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHCCCC GAEGRPIGRTIDALAALAGQKARITGTPPGPLRIEASGDVISLDAADAAPKLEGFSP CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA