| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is oppD [H]
Identifier: 89055544
GI number: 89055544
Start: 3084602
End: 3085594
Strand: Direct
Name: oppD [H]
Synonym: Jann_3053
Alternate gene names: 89055544
Gene position: 3084602-3085594 (Clockwise)
Preceding gene: 89055543
Following gene: 89055545
Centisome position: 71.44
GC content: 61.73
Gene sequence:
>993_bases ATGATCAATGCGGAACAACAAGATGCACTGCTATCCGTCCGCGACCTGTCCGTCGCCTTTTCGACGCCCGATGGCACGGT GCGGGCTGTCAACAAAATCTCATTCGACCTTGCGGCCAAGGACACACTGGCCATCGTCGGCGAAAGCGGGTCCGGCAAGA CACAGCTCGCCTTCGCGATCCTCGGGCTTCTGGCGCGTAACGGCACGTCCACTGGCTCGGTCATGCTGGAGGGGCAGGAG ATCCTGAACCTGCCGGAGCGCAAGCTGAATGCCATTCGCTCCGATCGTATTTCGATGATTTTCCAGGATCCCATGACCTC CCTGAACCCGTATCTGCGGATCGGCACGCAGATGGCGGAGGTGCTGCAACTCCACAAAGGCATGTCGAAAACCGAAGCGC TGGACGATTCCGCCAAGATGCTCGACGCCGTACGCATCCCCGATGCCAAAAGCCGTCTGCGCATGTATCCCCATGAGTTT TCCGGCGGGATGCGCCAACGGATCATGATCGCCATGTCGCTGCTCTGCCGCCCCAGGATCCTGATCGCCGATGAACCCAC CACCGCCCTGGACGTGACGGTACAGGCGCAGATCATGGACCTGCTCTCAGATATCCGCGAGGATTTTGGCACTGCGGTGA TCCTGATCACCCATGATCTTGGCATCGTTGCGGGGGCCAGCGCGCGCACAATGGTCATGTACGGTGGAAGGGTGATGGAG ACCGGGCCGACCGATAAGGTGTTCGCCGAACCCTCCCATCCCTACACCTCCGGTCTGCTTGCCGCCGTACCGCGCCTTGA TGTGCCGCAAGCCGCGTTGCAAACCATACCGGGCGATCCGCCGGACCTGATGAACATCCCCGACGGATGCCCGTTCTCGC CGCGCTGCCCGCTGGTCCACACGTCCTGCCATGACCACATGCCGTCACTTGATCAGTTCGACGCGGATCGCCTGCGCGCC TGCCATGCCGCGCGAGAGGAGGTGTCGCCATGA
Upstream 100 bases:
>100_bases ATGCTGATGTTCCCGCTGTTCTTCTTTGTAGTCACCCTGTTCGCCTTCTTCTTCGTCGGCGACGGGTTGCGCGACGCGCT CGATCCAAAGGATCGGTGAT
Downstream 100 bases:
>100_bases AAGATGATCCGCTTCTGAGCGTCGAAAGCCTCGATGTAACCTTCGATATTCCCAAACGCGGCGCGATGCCCTGGACAGCG CCGAACAAACTGCAAGCCAT
Product: oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MINAEQQDALLSVRDLSVAFSTPDGTVRAVNKISFDLAAKDTLAIVGESGSGKTQLAFAILGLLARNGTSTGSVMLEGQE ILNLPERKLNAIRSDRISMIFQDPMTSLNPYLRIGTQMAEVLQLHKGMSKTEALDDSAKMLDAVRIPDAKSRLRMYPHEF SGGMRQRIMIAMSLLCRPRILIADEPTTALDVTVQAQIMDLLSDIREDFGTAVILITHDLGIVAGASARTMVMYGGRVME TGPTDKVFAEPSHPYTSGLLAAVPRLDVPQAALQTIPGDPPDLMNIPDGCPFSPRCPLVHTSCHDHMPSLDQFDADRLRA CHAAREEVSP
Sequences:
>Translated_330_residues MINAEQQDALLSVRDLSVAFSTPDGTVRAVNKISFDLAAKDTLAIVGESGSGKTQLAFAILGLLARNGTSTGSVMLEGQE ILNLPERKLNAIRSDRISMIFQDPMTSLNPYLRIGTQMAEVLQLHKGMSKTEALDDSAKMLDAVRIPDAKSRLRMYPHEF SGGMRQRIMIAMSLLCRPRILIADEPTTALDVTVQAQIMDLLSDIREDFGTAVILITHDLGIVAGASARTMVMYGGRVME TGPTDKVFAEPSHPYTSGLLAAVPRLDVPQAALQTIPGDPPDLMNIPDGCPFSPRCPLVHTSCHDHMPSLDQFDADRLRA CHAAREEVSP >Mature_330_residues MINAEQQDALLSVRDLSVAFSTPDGTVRAVNKISFDLAAKDTLAIVGESGSGKTQLAFAILGLLARNGTSTGSVMLEGQE ILNLPERKLNAIRSDRISMIFQDPMTSLNPYLRIGTQMAEVLQLHKGMSKTEALDDSAKMLDAVRIPDAKSRLRMYPHEF SGGMRQRIMIAMSLLCRPRILIADEPTTALDVTVQAQIMDLLSDIREDFGTAVILITHDLGIVAGASARTMVMYGGRVME TGPTDKVFAEPSHPYTSGLLAAVPRLDVPQAALQTIPGDPPDLMNIPDGCPFSPRCPLVHTSCHDHMPSLDQFDADRLRA CHAAREEVSP
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI156105685, Length=277, Percent_Identity=29.9638989169675, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4505771, Length=246, Percent_Identity=28.0487804878049, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961252, Length=246, Percent_Identity=28.0487804878049, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI42741659, Length=253, Percent_Identity=28.4584980237154, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI9961250, Length=221, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI9665248, Length=242, Percent_Identity=27.6859504132231, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI171184400, Length=269, Percent_Identity=24.5353159851301, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI21536378, Length=243, Percent_Identity=29.2181069958848, Blast_Score=66, Evalue=6e-11, Organism=Homo sapiens, GI105990541, Length=214, Percent_Identity=26.6355140186916, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI48994883, Length=324, Percent_Identity=61.4197530864197, Blast_Score=426, Evalue=1e-120, Organism=Escherichia coli, GI1789963, Length=315, Percent_Identity=43.1746031746032, Blast_Score=274, Evalue=6e-75, Organism=Escherichia coli, GI1787759, Length=322, Percent_Identity=41.9254658385093, Blast_Score=259, Evalue=3e-70, Organism=Escherichia coli, GI145693107, Length=275, Percent_Identity=47.2727272727273, Blast_Score=256, Evalue=2e-69, Organism=Escherichia coli, GI1787500, Length=321, Percent_Identity=40.4984423676012, Blast_Score=226, Evalue=1e-60, Organism=Escherichia coli, GI1788506, Length=262, Percent_Identity=44.6564885496183, Blast_Score=222, Evalue=3e-59, Organism=Escherichia coli, GI1789962, Length=332, Percent_Identity=35.5421686746988, Blast_Score=204, Evalue=7e-54, Organism=Escherichia coli, GI1787548, Length=307, Percent_Identity=35.5048859934853, Blast_Score=197, Evalue=6e-52, Organism=Escherichia coli, GI1787758, Length=329, Percent_Identity=36.1702127659575, Blast_Score=183, Evalue=2e-47, Organism=Escherichia coli, GI48994997, Length=254, Percent_Identity=35.0393700787402, Blast_Score=145, Evalue=5e-36, Organism=Escherichia coli, GI1787547, Length=263, Percent_Identity=34.6007604562738, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=37.1794871794872, Blast_Score=138, Evalue=4e-34, Organism=Escherichia coli, GI1789891, Length=212, Percent_Identity=34.9056603773585, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1786398, Length=271, Percent_Identity=29.520295202952, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=32.3144104803493, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1790162, Length=251, Percent_Identity=27.8884462151394, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081791, Length=254, Percent_Identity=28.740157480315, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=26.9058295964126, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=32.0512820512821, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=30.2040816326531, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1789032, Length=239, Percent_Identity=27.6150627615063, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1786703, Length=200, Percent_Identity=34, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1789672, Length=256, Percent_Identity=26.5625, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=27.5720164609054, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788761, Length=245, Percent_Identity=27.7551020408163, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=29.4372294372294, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87082267, Length=248, Percent_Identity=25.4032258064516, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI87081834, Length=218, Percent_Identity=33.0275229357798, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87081709, Length=255, Percent_Identity=21.9607843137255, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=28.7671232876712, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788644, Length=199, Percent_Identity=28.1407035175879, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=31.9634703196347, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=27.5862068965517, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789864, Length=257, Percent_Identity=25.2918287937743, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789991, Length=236, Percent_Identity=27.9661016949153, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=29.1479820627803, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1790467, Length=247, Percent_Identity=24.6963562753036, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=26.6355140186916, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788165, Length=231, Percent_Identity=25.974025974026, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788472, Length=237, Percent_Identity=26.1603375527426, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790739, Length=268, Percent_Identity=27.6119402985075, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786319, Length=201, Percent_Identity=30.3482587064677, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=29.3103448275862, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=26.605504587156, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788053, Length=195, Percent_Identity=27.6923076923077, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1790525, Length=220, Percent_Identity=25.4545454545455, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=28.7081339712919, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI48995001, Length=242, Percent_Identity=29.3388429752066, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790534, Length=200, Percent_Identity=28.5, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786654, Length=252, Percent_Identity=23.015873015873, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI48994943, Length=250, Percent_Identity=22.4, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789586, Length=244, Percent_Identity=24.5901639344262, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786803, Length=209, Percent_Identity=26.7942583732057, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787112, Length=257, Percent_Identity=27.6264591439689, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788002, Length=244, Percent_Identity=26.2295081967213, Blast_Score=62, Evalue=7e-11, Organism=Escherichia coli, GI1787143, Length=233, Percent_Identity=28.3261802575107, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI212646699, Length=245, Percent_Identity=27.3469387755102, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71996809, Length=244, Percent_Identity=26.2295081967213, Blast_Score=88, Evalue=8e-18, Organism=Caenorhabditis elegans, GI193211015, Length=244, Percent_Identity=25.8196721311475, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193211017, Length=244, Percent_Identity=25.8196721311475, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI193209708, Length=251, Percent_Identity=28.6852589641434, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI25146777, Length=304, Percent_Identity=26.6447368421053, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193202349, Length=252, Percent_Identity=28.1746031746032, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17543740, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17541710, Length=247, Percent_Identity=29.1497975708502, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115534520, Length=252, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71983523, Length=254, Percent_Identity=25.1968503937008, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983510, Length=254, Percent_Identity=25.1968503937008, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71983516, Length=254, Percent_Identity=25.1968503937008, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71984940, Length=242, Percent_Identity=28.099173553719, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193208177, Length=232, Percent_Identity=27.1551724137931, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17558664, Length=215, Percent_Identity=28.3720930232558, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565938, Length=252, Percent_Identity=27.3809523809524, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569143, Length=237, Percent_Identity=25.3164556962025, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533592, Length=261, Percent_Identity=26.0536398467433, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17569081, Length=256, Percent_Identity=27.734375, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=242, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322640, Length=255, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=226, Percent_Identity=29.2035398230088, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641565, Length=247, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI17136662, Length=227, Percent_Identity=29.0748898678414, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI85726357, Length=253, Percent_Identity=26.8774703557312, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007184, Length=233, Percent_Identity=24.4635193133047, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221500365, Length=233, Percent_Identity=24.4635193133047, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35819; Mature: 35819
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINAEQQDALLSVRDLSVAFSTPDGTVRAVNKISFDLAAKDTLAIVGESGSGKTQLAFAI CCCCCCHHHHEEEEEEEEEEECCCCCCHHHHHHEEEEECCCEEEEEECCCCCCHHHHHHH LGLLARNGTSTGSVMLEGQEILNLPERKLNAIRSDRISMIFQDPMTSLNPYLRIGTQMAE HHHHHCCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHEEECCCHHHCCHHHHHHHHHHH VLQLHKGMSKTEALDDSAKMLDAVRIPDAKSRLRMYPHEFSGGMRQRIMIAMSLLCRPRI HHHHHCCCCHHHHHCHHHHHHHHHCCCCHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCEE LIADEPTTALDVTVQAQIMDLLSDIREDFGTAVILITHDLGIVAGASARTMVMYGGRVME EEECCCCCEEEEEHHHHHHHHHHHHHHHHCCEEEEEEECCCEEECCCCCEEEEECCEEEE TGPTDKVFAEPSHPYTSGLLAAVPRLDVPQAALQTIPGDPPDLMNIPDGCPFSPRCPLVH CCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE TSCHDHMPSLDQFDADRLRACHAAREEVSP CCHHHCCCCCHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MINAEQQDALLSVRDLSVAFSTPDGTVRAVNKISFDLAAKDTLAIVGESGSGKTQLAFAI CCCCCCHHHHEEEEEEEEEEECCCCCCHHHHHHEEEEECCCEEEEEECCCCCCHHHHHHH LGLLARNGTSTGSVMLEGQEILNLPERKLNAIRSDRISMIFQDPMTSLNPYLRIGTQMAE HHHHHCCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHEEECCCHHHCCHHHHHHHHHHH VLQLHKGMSKTEALDDSAKMLDAVRIPDAKSRLRMYPHEFSGGMRQRIMIAMSLLCRPRI HHHHHCCCCHHHHHCHHHHHHHHHCCCCHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCEE LIADEPTTALDVTVQAQIMDLLSDIREDFGTAVILITHDLGIVAGASARTMVMYGGRVME EEECCCCCEEEEEHHHHHHHHHHHHHHHHCCEEEEEEECCCEEECCCCCEEEEECCEEEE TGPTDKVFAEPSHPYTSGLLAAVPRLDVPQAALQTIPGDPPDLMNIPDGCPFSPRCPLVH CCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE TSCHDHMPSLDQFDADRLRACHAAREEVSP CCHHHCCCCCHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]