Click here to switch to the map view.

The map label for this gene is oppC [H]

Identifier: 89055543

GI number: 89055543

Start: 3083647

End: 3084600

Strand: Direct

Name: oppC [H]

Synonym: Jann_3052

Alternate gene names: 89055543

Gene position: 3083647-3084600 (Clockwise)

Preceding gene: 89055542

Following gene: 89055544

Centisome position: 71.41

GC content: 62.58

Gene sequence:

>954_bases
ATGCTTGCCACACGCCAAACCGCCGACGCGCTTGCGACGTCTGAACCGGCCGGGCCGCCACGGTCCCTCTGGGCCGATGC
GCGCGCACGTTTCTCGCGCAACCGCGCGGCCTTGGCCGGGTTGATCGTGCTGGGATTGGTCGGAGCCTTCGCACTCTTCG
GTCCGCTGATAGCACGCAGTTCGATCGAGACAATTAACTGGTCGATCCTGGGCAACGTCGACAATGCAGGCGGGCCTTGT
TTCTTCTCGGGGCCCGACAACGAGATCCCCCCCTGCGCCGAGACCGGCCTTTGGTTCGGCACCGATGCCCAGGCCCGCGA
TCTGTTCGCGCGCACCGTGCAGGGCACGCAGATCAGCCTGATGGTCGGCATCGTCGGCGCGCTGATCGCCGTGGTCGTCG
GCACGCTTTACGGCGCCATCGCCGGCTATTACGGGGGCCGCGTTGATAATGTCATGATGCGCATCGTCGATGTGCTGATG
TCTATTCCCTATATGTTCGTTCTGATCCTGCTGCTGGTCATTTTCGGGCGCTCCATCCTGATGCTGTTCATCGGCATCGG
GCTGATCTCCTGGCTGGACATGGCGCGGATCGCGCGGGGCCAGACCCTGTCGCTGCGCGGCAAGGAATTCGTGGAAGCCG
CAATCGCCACCGGCGTGCCACCCTTCCGCATCATCCTGCGCCACATCGTGCCCAACCTGCTGGGGGTCGTGATCGTCTAT
GCCACGCTATTGGTCCCCTCCATGATCATCTATGAGAGCTTCATCTCCTTCCTCGGCCTCGGCGTGCAGGAGCCGCTGAC
GTCCTGGGGTGCATTGATTAACGATGGCTCAGACCAGATGCGGCAGGGCCTTTGGATGCTGATGTTCCCGCTGTTCTTCT
TTGTAGTCACCCTGTTCGCCTTCTTCTTCGTCGGCGACGGGTTGCGCGACGCGCTCGATCCAAAGGATCGGTGA

Upstream 100 bases:

>100_bases
CACCGTCCTGCTGGGGGCGCTGACGATCTTCTTCAACCTTCTGGTCGATATCCTCTACGCATGGATCGACCCGAAGATCC
GGTATTAGAGGAGGCGCGCG

Downstream 100 bases:

>100_bases
TATGATCAATGCGGAACAACAAGATGCACTGCTATCCGTCCGCGACCTGTCCGTCGCCTTTTCGACGCCCGATGGCACGG
TGCGGGCTGTCAACAAAATC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLATRQTADALATSEPAGPPRSLWADARARFSRNRAALAGLIVLGLVGAFALFGPLIARSSIETINWSILGNVDNAGGPC
FFSGPDNEIPPCAETGLWFGTDAQARDLFARTVQGTQISLMVGIVGALIAVVVGTLYGAIAGYYGGRVDNVMMRIVDVLM
SIPYMFVLILLLVIFGRSILMLFIGIGLISWLDMARIARGQTLSLRGKEFVEAAIATGVPPFRIILRHIVPNLLGVVIVY
ATLLVPSMIIYESFISFLGLGVQEPLTSWGALINDGSDQMRQGLWMLMFPLFFFVVTLFAFFFVGDGLRDALDPKDR

Sequences:

>Translated_317_residues
MLATRQTADALATSEPAGPPRSLWADARARFSRNRAALAGLIVLGLVGAFALFGPLIARSSIETINWSILGNVDNAGGPC
FFSGPDNEIPPCAETGLWFGTDAQARDLFARTVQGTQISLMVGIVGALIAVVVGTLYGAIAGYYGGRVDNVMMRIVDVLM
SIPYMFVLILLLVIFGRSILMLFIGIGLISWLDMARIARGQTLSLRGKEFVEAAIATGVPPFRIILRHIVPNLLGVVIVY
ATLLVPSMIIYESFISFLGLGVQEPLTSWGALINDGSDQMRQGLWMLMFPLFFFVVTLFAFFFVGDGLRDALDPKDR
>Mature_317_residues
MLATRQTADALATSEPAGPPRSLWADARARFSRNRAALAGLIVLGLVGAFALFGPLIARSSIETINWSILGNVDNAGGPC
FFSGPDNEIPPCAETGLWFGTDAQARDLFARTVQGTQISLMVGIVGALIAVVVGTLYGAIAGYYGGRVDNVMMRIVDVLM
SIPYMFVLILLLVIFGRSILMLFIGIGLISWLDMARIARGQTLSLRGKEFVEAAIATGVPPFRIILRHIVPNLLGVVIVY
ATLLVPSMIIYESFISFLGLGVQEPLTSWGALINDGSDQMRQGLWMLMFPLFFFVVTLFAFFFVGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=319, Percent_Identity=53.2915360501567, Blast_Score=301, Evalue=4e-83,
Organism=Escherichia coli, GI1787054, Length=295, Percent_Identity=34.9152542372881, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787760, Length=227, Percent_Identity=37.4449339207048, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1789889, Length=235, Percent_Identity=34.0425531914894, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=32.15859030837, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789964, Length=230, Percent_Identity=33.9130434782609, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787549, Length=305, Percent_Identity=23.9344262295082, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34340; Mature: 34340

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATRQTADALATSEPAGPPRSLWADARARFSRNRAALAGLIVLGLVGAFALFGPLIARS
CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIETINWSILGNVDNAGGPCFFSGPDNEIPPCAETGLWFGTDAQARDLFARTVQGTQISL
HHHHHCEEEEECCCCCCCCEEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCHHHH
MVGIVGALIAVVVGTLYGAIAGYYGGRVDNVMMRIVDVLMSIPYMFVLILLLVIFGRSIL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLFIGIGLISWLDMARIARGQTLSLRGKEFVEAAIATGVPPFRIILRHIVPNLLGVVIVY
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ATLLVPSMIIYESFISFLGLGVQEPLTSWGALINDGSDQMRQGLWMLMFPLFFFVVTLFA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
FFFVGDGLRDALDPKDR
HHHHCCCHHHCCCCCCC
>Mature Secondary Structure
MLATRQTADALATSEPAGPPRSLWADARARFSRNRAALAGLIVLGLVGAFALFGPLIARS
CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIETINWSILGNVDNAGGPCFFSGPDNEIPPCAETGLWFGTDAQARDLFARTVQGTQISL
HHHHHCEEEEECCCCCCCCEEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCHHHH
MVGIVGALIAVVVGTLYGAIAGYYGGRVDNVMMRIVDVLMSIPYMFVLILLLVIFGRSIL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLFIGIGLISWLDMARIARGQTLSLRGKEFVEAAIATGVPPFRIILRHIVPNLLGVVIVY
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ATLLVPSMIIYESFISFLGLGVQEPLTSWGALINDGSDQMRQGLWMLMFPLFFFVVTLFA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
FFFVGDGLRDALDPKDR
HHHHCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]