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The map label for this gene is oppB [H]

Identifier: 89055542

GI number: 89055542

Start: 3082711

End: 3083634

Strand: Direct

Name: oppB [H]

Synonym: Jann_3051

Alternate gene names: 89055542

Gene position: 3082711-3083634 (Clockwise)

Preceding gene: 89055541

Following gene: 89055543

Centisome position: 71.39

GC content: 61.8

Gene sequence:

>924_bases
ATGGCAGCCTTTATCCTCAAACGCATTCTCGTCGCGATCCCGGTTCTGCTGATCCTGATCGTGCTGACCTTCGTGCTGAT
GTATGCAGCCCCCGGCAGTCCGTTCGCGTCCGAACGCGGCGTGCCGCCTGCTGTGTTGGCGAATCTGGAGCGCGAATACG
GGCTGGACCGTCCGTTTCTGGCGCAGATCGGCACCTATGTCTGGAACATCGTCACCCAATTCGACTTCGGGCCGTCCTTC
CAGTACCGCGACCAGGACGTCAACGACCTGATCGAACAGGGCTTCCCCGTCACTCTTACGTATGGGTTCTGGAGCTTTCT
GGTGGCCATCCTCGTGGGCGCGCCCCTGGGGATCTTGGCCGCGATCCGCCATAACTCCGCGCTGGATTATGCCGCTGTCG
GCATTTCCGTCGGGGCGCAGGTGTTGCCCAACTTCGTGCTGGCTCCAATCCTGGTGCTGATCTTCACCGTCTGGCTGGGG
TGGCTGCCCGGTGGCGGCTGGCAGGGCGGACAGATCGAATACGTGATCTTGCCGGTTATCGCCCTGTCGACCTCCTTCAT
GGCGTCCATCGCGCGCATCGCCCGCGCCTCTATGCTGGAGGTGATGACCTCCAACTTCATCCGCACCGCACGCGCCAAGG
GCCTGCCGGAGCGCACTGTCGTGCTGCGCCATGCCTTGAAACCGGCGTTGTTGCCCGTGATTTCCTACCTTGGCCCGGCC
TTCGTGGGCATGATCACCGGGTCCGTGGTCATTGACCTCTACTTCTCCACCGGCGGCATCGGGCAGTTCTTTGTCGCCTC
CGCGCTGAACCGCGATTACGGCGTGATGATGGGCATCACCGTCCTGCTGGGGGCGCTGACGATCTTCTTCAACCTTCTGG
TCGATATCCTCTACGCATGGATCGACCCGAAGATCCGGTATTAG

Upstream 100 bases:

>100_bases
TTGGTACGTGCGCGATCTCTACCGCGTCGCGTCCGAGTGATCATGGTCTGCCGGGGCGGGTGACGAGACCACCCGCCCCG
GCAGGGCCCTGAGCTACCTG

Downstream 100 bases:

>100_bases
AGGAGGCGCGCGATGCTTGCCACACGCCAAACCGCCGACGCGCTTGCGACGTCTGAACCGGCCGGGCCGCCACGGTCCCT
CTGGGCCGATGCGCGCGCAC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MAAFILKRILVAIPVLLILIVLTFVLMYAAPGSPFASERGVPPAVLANLEREYGLDRPFLAQIGTYVWNIVTQFDFGPSF
QYRDQDVNDLIEQGFPVTLTYGFWSFLVAILVGAPLGILAAIRHNSALDYAAVGISVGAQVLPNFVLAPILVLIFTVWLG
WLPGGGWQGGQIEYVILPVIALSTSFMASIARIARASMLEVMTSNFIRTARAKGLPERTVVLRHALKPALLPVISYLGPA
FVGMITGSVVIDLYFSTGGIGQFFVASALNRDYGVMMGITVLLGALTIFFNLLVDILYAWIDPKIRY

Sequences:

>Translated_307_residues
MAAFILKRILVAIPVLLILIVLTFVLMYAAPGSPFASERGVPPAVLANLEREYGLDRPFLAQIGTYVWNIVTQFDFGPSF
QYRDQDVNDLIEQGFPVTLTYGFWSFLVAILVGAPLGILAAIRHNSALDYAAVGISVGAQVLPNFVLAPILVLIFTVWLG
WLPGGGWQGGQIEYVILPVIALSTSFMASIARIARASMLEVMTSNFIRTARAKGLPERTVVLRHALKPALLPVISYLGPA
FVGMITGSVVIDLYFSTGGIGQFFVASALNRDYGVMMGITVLLGALTIFFNLLVDILYAWIDPKIRY
>Mature_306_residues
AAFILKRILVAIPVLLILIVLTFVLMYAAPGSPFASERGVPPAVLANLEREYGLDRPFLAQIGTYVWNIVTQFDFGPSFQ
YRDQDVNDLIEQGFPVTLTYGFWSFLVAILVGAPLGILAAIRHNSALDYAAVGISVGAQVLPNFVLAPILVLIFTVWLGW
LPGGGWQGGQIEYVILPVIALSTSFMASIARIARASMLEVMTSNFIRTARAKGLPERTVVLRHALKPALLPVISYLGPAF
VGMITGSVVIDLYFSTGGIGQFFVASALNRDYGVMMGITVLLGALTIFFNLLVDILYAWIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=55.3745928338762, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=33.3333333333333, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=37.741935483871, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=33.7620578778135, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=27.2727272727273, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=32.4921135646688, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787550, Length=264, Percent_Identity=29.5454545454545, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33460; Mature: 33329

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAFILKRILVAIPVLLILIVLTFVLMYAAPGSPFASERGVPPAVLANLEREYGLDRPFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
AQIGTYVWNIVTQFDFGPSFQYRDQDVNDLIEQGFPVTLTYGFWSFLVAILVGAPLGILA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHCHHHHHH
AIRHNSALDYAAVGISVGAQVLPNFVLAPILVLIFTVWLGWLPGGGWQGGQIEYVILPVI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHH
ALSTSFMASIARIARASMLEVMTSNFIRTARAKGLPERTVVLRHALKPALLPVISYLGPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVGMITGSVVIDLYFSTGGIGQFFVASALNRDYGVMMGITVLLGALTIFFNLLVDILYAW
HHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDPKIRY
HCCCCCC
>Mature Secondary Structure 
AAFILKRILVAIPVLLILIVLTFVLMYAAPGSPFASERGVPPAVLANLEREYGLDRPFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
AQIGTYVWNIVTQFDFGPSFQYRDQDVNDLIEQGFPVTLTYGFWSFLVAILVGAPLGILA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHCHHHHHH
AIRHNSALDYAAVGISVGAQVLPNFVLAPILVLIFTVWLGWLPGGGWQGGQIEYVILPVI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHH
ALSTSFMASIARIARASMLEVMTSNFIRTARAKGLPERTVVLRHALKPALLPVISYLGPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVGMITGSVVIDLYFSTGGIGQFFVASALNRDYGVMMGITVLLGALTIFFNLLVDILYAW
HHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDPKIRY
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]