| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055490
Identifier: 89055490
GI number: 89055490
Start: 3018670
End: 3020094
Strand: Direct
Name: 89055490
Synonym: Jann_2999
Alternate gene names: NA
Gene position: 3018670-3020094 (Clockwise)
Preceding gene: 89055489
Following gene: 89055491
Centisome position: 69.91
GC content: 65.4
Gene sequence:
>1425_bases ATGGTTGACCGCATCCTCGGGCCGCTTCTGATCCTGGATCATGTGGCCGATGGTCAGATGCATGTTGCGGCGGTGTTCGT GGCCCCTCTGGGGCAAGACGTCCCTCCGGTCCGTGTGGACGGCACTGCCGTGCCTGTGCAGCCGCTTCTCGCCTTCGGCT CCGCGCAGCTGTGGCGGGCGCGCTTCGCTTTGCCCGCCGATGCGCCTTCGGCGTATGAGTGGGGCGAGCAGCGGTTCGAT GTGGCGTCTGATCTCAGCGGAGATTTGAGGATCGCCTATGCGTCTTGCAACGGAGAGGAGCACGGCGACCTCACGCGCCT GGCCAAAGAGCGCAACATCATGTGGGCGCGGCTGGCCAAAGACCATCGCAACGCGCCCTTTGGCCTTCTGCTTCTGGGCG GCGATCAGGTCTATGCCGATGAGGCGACGCGGGGCCATCCGCTCTCCGATGAATGGCCCGAAAAGATCCCTCGCGATCCC CTGCCCCACGATCTGGACGATCTGCGCGCCCACCTGCGAGAAGGGTTTCTGGAACGCTATGTGGCGCAGCTGCAAGACCC CGACTATGCGTGGCTGACCGCGCGCGTGCCAAGTCTGTCGCAATGGGACGACCACGACATCTGTGATGGCTGGGGCTCTC TGCCTCGGTCGCGCACCTATTCGCCGGTTGGGCAGGTCTTGTTTGACGTCGCCAAAGAGGCCGCTCTGGCGTTTCAGCAC GGAACCGTGGCAGGCGATCTGCCCGCGCGGTTTGCGGATCCGGACGGCTATCACCTCAACTGGGCCGTCCAGATGCCCGG CCTGCGCCTGCTTGGTCCCGATCTGCGGTCCGAGCGGACGCGGCGACAGGTCATGGACGTTGGTGGATGGGCTGATGTCG AGGCCCATGCCGAAGCGCCGTTCCAGGGCCGCACTTTCGTGATGTCCTCCGTCCCGCTCCTCGGGCCGCGGCTGTCGATT CTGGAGACGCTGATGGTGGTCACACCCCGGATGCAGAAATACGAGGACGACCTGCGCGATCAATGGCAAAGCCGCGCCCA CCGCGACAGTTGGCGGCGGATGCTGCGCCTGATGATGCAGATGCAGGAGCAAGAGGGGCAGGACGTCGCGATCTTGTCGG GCGAAATTCACCTCGCCACACTCGCCACAATGGCGGCCCGCAACGGGCAAATGCTGCACCAGCTGGTGGCCTCTGCCGTG ACGCACAGACCACCCCCGAAAGCCTGGGCGCGGTTCCTGGGGACACTGTCGCGATTGGGCGAGGCACCGCTGCCCGGCCA CCGCATTCGCATCCGCCGCATCCCGGGCCAATCCCTGCGCTATGTCGCAGATCGCAACGTTCTGGTTTTGGAACGTCGCG GTGGCGCATGGCAGGCCGTCTGGCATTTTGAGCAGACAGGCGCATCCCCGCCCCTGGCCCTCTGA
Upstream 100 bases:
>100_bases CGCGGCCTGATCTGGACGCCGCCATTGCCGCACTTCCTGCGACCGGCGTGATGGCTGGGACCCCCGTGGCGCTGCGGATT GAGGATGTGTGACGCGGCCC
Downstream 100 bases:
>100_bases CCCGCCCACGCCGCCGGTGTTAGCGCCCCCAGCCTTGCCGCTCTGCCCCCCGCCCGCTATGGCGGAGGCCACACGCACCC ACACTTGCAGGACAAAGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MVDRILGPLLILDHVADGQMHVAAVFVAPLGQDVPPVRVDGTAVPVQPLLAFGSAQLWRARFALPADAPSAYEWGEQRFD VASDLSGDLRIAYASCNGEEHGDLTRLAKERNIMWARLAKDHRNAPFGLLLLGGDQVYADEATRGHPLSDEWPEKIPRDP LPHDLDDLRAHLREGFLERYVAQLQDPDYAWLTARVPSLSQWDDHDICDGWGSLPRSRTYSPVGQVLFDVAKEAALAFQH GTVAGDLPARFADPDGYHLNWAVQMPGLRLLGPDLRSERTRRQVMDVGGWADVEAHAEAPFQGRTFVMSSVPLLGPRLSI LETLMVVTPRMQKYEDDLRDQWQSRAHRDSWRRMLRLMMQMQEQEGQDVAILSGEIHLATLATMAARNGQMLHQLVASAV THRPPPKAWARFLGTLSRLGEAPLPGHRIRIRRIPGQSLRYVADRNVLVLERRGGAWQAVWHFEQTGASPPLAL
Sequences:
>Translated_474_residues MVDRILGPLLILDHVADGQMHVAAVFVAPLGQDVPPVRVDGTAVPVQPLLAFGSAQLWRARFALPADAPSAYEWGEQRFD VASDLSGDLRIAYASCNGEEHGDLTRLAKERNIMWARLAKDHRNAPFGLLLLGGDQVYADEATRGHPLSDEWPEKIPRDP LPHDLDDLRAHLREGFLERYVAQLQDPDYAWLTARVPSLSQWDDHDICDGWGSLPRSRTYSPVGQVLFDVAKEAALAFQH GTVAGDLPARFADPDGYHLNWAVQMPGLRLLGPDLRSERTRRQVMDVGGWADVEAHAEAPFQGRTFVMSSVPLLGPRLSI LETLMVVTPRMQKYEDDLRDQWQSRAHRDSWRRMLRLMMQMQEQEGQDVAILSGEIHLATLATMAARNGQMLHQLVASAV THRPPPKAWARFLGTLSRLGEAPLPGHRIRIRRIPGQSLRYVADRNVLVLERRGGAWQAVWHFEQTGASPPLAL >Mature_474_residues MVDRILGPLLILDHVADGQMHVAAVFVAPLGQDVPPVRVDGTAVPVQPLLAFGSAQLWRARFALPADAPSAYEWGEQRFD VASDLSGDLRIAYASCNGEEHGDLTRLAKERNIMWARLAKDHRNAPFGLLLLGGDQVYADEATRGHPLSDEWPEKIPRDP LPHDLDDLRAHLREGFLERYVAQLQDPDYAWLTARVPSLSQWDDHDICDGWGSLPRSRTYSPVGQVLFDVAKEAALAFQH GTVAGDLPARFADPDGYHLNWAVQMPGLRLLGPDLRSERTRRQVMDVGGWADVEAHAEAPFQGRTFVMSSVPLLGPRLSI LETLMVVTPRMQKYEDDLRDQWQSRAHRDSWRRMLRLMMQMQEQEGQDVAILSGEIHLATLATMAARNGQMLHQLVASAV THRPPPKAWARFLGTLSRLGEAPLPGHRIRIRRIPGQSLRYVADRNVLVLERRGGAWQAVWHFEQTGASPPLAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53042; Mature: 53042
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDRILGPLLILDHVADGQMHVAAVFVAPLGQDVPPVRVDGTAVPVQPLLAFGSAQLWRA CCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEECCCCCCHHHHHHHCCHHHHHH RFALPADAPSAYEWGEQRFDVASDLSGDLRIAYASCNGEEHGDLTRLAKERNIMWARLAK HCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHH DHRNAPFGLLLLGGDQVYADEATRGHPLSDEWPEKIPRDPLPHDLDDLRAHLREGFLERY HCCCCCEEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH VAQLQDPDYAWLTARVPSLSQWDDHDICDGWGSLPRSRTYSPVGQVLFDVAKEAALAFQH HHHHCCCCEEEEEEECCCCCCCCCCCHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC GTVAGDLPARFADPDGYHLNWAVQMPGLRLLGPDLRSERTRRQVMDVGGWADVEAHAEAP CCEECCCCCCCCCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCHHCCCCC FQGRTFVMSSVPLLGPRLSILETLMVVTPRMQKYEDDLRDQWQSRAHRDSWRRMLRLMMQ CCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQEQEGQDVAILSGEIHLATLATMAARNGQMLHQLVASAVTHRPPPKAWARFLGTLSRLG HHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC EAPLPGHRIRIRRIPGQSLRYVADRNVLVLERRGGAWQAVWHFEQTGASPPLAL CCCCCCCEEEEEECCCCHHHHEECCCEEEEECCCCCEEEEEEEHHCCCCCCCCC >Mature Secondary Structure MVDRILGPLLILDHVADGQMHVAAVFVAPLGQDVPPVRVDGTAVPVQPLLAFGSAQLWRA CCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEECCCCCCHHHHHHHCCHHHHHH RFALPADAPSAYEWGEQRFDVASDLSGDLRIAYASCNGEEHGDLTRLAKERNIMWARLAK HCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHH DHRNAPFGLLLLGGDQVYADEATRGHPLSDEWPEKIPRDPLPHDLDDLRAHLREGFLERY HCCCCCEEEEEECCCEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH VAQLQDPDYAWLTARVPSLSQWDDHDICDGWGSLPRSRTYSPVGQVLFDVAKEAALAFQH HHHHCCCCEEEEEEECCCCCCCCCCCHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC GTVAGDLPARFADPDGYHLNWAVQMPGLRLLGPDLRSERTRRQVMDVGGWADVEAHAEAP CCEECCCCCCCCCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCHHCCCCC FQGRTFVMSSVPLLGPRLSILETLMVVTPRMQKYEDDLRDQWQSRAHRDSWRRMLRLMMQ CCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQEQEGQDVAILSGEIHLATLATMAARNGQMLHQLVASAVTHRPPPKAWARFLGTLSRLG HHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC EAPLPGHRIRIRRIPGQSLRYVADRNVLVLERRGGAWQAVWHFEQTGASPPLAL CCCCCCCEEEEEECCCCHHHHEECCCEEEEECCCCCEEEEEEEHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA