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The map label for this gene is yciR [C]

Identifier: 89055410

GI number: 89055410

Start: 2941696

End: 2943690

Strand: Direct

Name: yciR [C]

Synonym: Jann_2919

Alternate gene names: 89055410

Gene position: 2941696-2943690 (Clockwise)

Preceding gene: 89055409

Following gene: 89055417

Centisome position: 68.13

GC content: 60.75

Gene sequence:

>1995_bases
ATGGACAAAATTGATCAGACCCCGCGGATTGATCAATTCGCCGCCGCGCGCAAGCTGCACACGCCAATCTGGCTCTATGA
CATCGACGCATGTCGGATTCTGCACGCCAATCGTGCCGCCTGTGCGCTGTGGCACGCGCGCTCGGAAGAGGAGTTGCAAA
ACCGCGATCTGGCACAGGATATGTCTGCGACGGTTGCCAAACGTCTGGCGCAGTACAAAGCCGATTTCATTGCGCGCGAC
GCCACTTTCAACGAGATGTGGACCCTGTTCCCCGACGGCGTCCCAACCAGTGTCATGGTGCTGTTCAGCGGGTTCCGTCT
GCTTGACGGACGCATGGCGATGCAATGCGAGGTTCTGGGCGCACCCGATCCGCTACCAGACAACCTCCGCAGCGCCGAGG
CGCTGTTACACACCGACGTCATGATCACGCTGTTCCGGGAAGACGGTGTTCCGCTCTACATGAACCCCGCCGCGCGCAAC
ATGGTCGGAGAGGCCAGCGCCCCGTTGCGGGACCTGTTGGTTACGCGAACCGACTATGACACTATGGTCAGTGGCCTCGC
CAAAGGGGGCGAACACCGCCAGGTCGCGGAAATTCAAACGAAAACTGGCACACGCTGGTTCGACATCTCTGCCAAGCGAT
GTCGGGACGCCGCCACAGGTGATCCGGCTGTCCTTGTGACAGCCATTGACGTGAGCGAATTAAAGCGCGCCCGCGATCAG
GCCCGCTATCTCGCCCGCCGCGATCAACTGACAGGGTGCTACAATCGCTCGCACCTGACACGGTTTGTCGCGGAGCTGGC
TGATGCGCAGGCCACGCAGGTCACCCTACTCTACTTCGATATCGACCGGTTCAAGCAGATCAACGACACCTACGGGCATG
TCATCGGCGACCGTGTTCTGATGGCGATGGCAGATCGCGCCATCCAGCTGACGCAGGACACCGATGCGGTCGTGCGCCTG
GGCGGCGATGAGTTCGTGGTTGTCCTGGGCGCGACGGATGCAGCGTCGCGGTTGGAACGGGTCGAGCGGTTTTTCAAAGC
CTTGTCCGCCCCAACGGACTTCGCCTCGATCACGGTGAACAGCCGGGTCAGTCTGGGAGTTTCCGTCTTCGATCCGACCC
AGACCGATGTCGACGTGGCCCTGCGCCATGCCGACATCGCGCTTTATCTGGCCAAGAATACCGGGCGCAATCGGTACGTC
GTCTACGATGACCAAATGGGCGAAGAGGCGGACAAGCGCAGCCGCACCGAGGCTGAGATCGAGAGCGCGCTTAACGCGCA
GCAATTTGAGCTTTACTACCAGCCAAGGGTCGATCTGGCGAGCGGACGCATCGTGGCCGTGGAGGGCCTGGCGCGGTGGC
GGCATCCTGATCGTGGGTTTGTGCCACCTGACGAGTTTATCCCGATCTGCGAGGAAACCGGCCTGATCCACCTGTTGGGG
CGGCGCGTGTTGGAGATGGGTTTCGCCCAGGCCATTGCTTGGAGCGAGGCGGGGCTGGACGTGCAGTTATCGCTCAATAT
TTCCCCGCGCCAGTTCTCGGACCCGCAATTGTTGGACAATTTGAAGGCCTATGCCGACCGTCCGGATTTCCCGACCCACA
AGATCGAGCTGGAGATCACCGAAAGCGTCTTGATCGGGGACCAGGACGGGATCGCAGCCAAGCTGCACGCGATCACGGCG
ATGGGCTACCAGATCTCGATTGACGACTTCGGCACAGGCTATTCGAACCTGTCCTATATCTCGCGGTTTCCCTTGCATTG
CCTCAAGATCGACCGCTCATTCATTGAGCAATTGCCTGCCTCGGGCCCTATTGTGCGGCTGATCCTTGCGCTGGCTCAGG
AATTGGGTGTGACTTCCGTGGCCGAAGGGGTGGAGACGCAAGCGCAATTCGACTGGCTGACCTCCCATGGCTGCACGCAG
ATCCAAGGCTATTTCGTGGCCCACCCAGCACCAGCCGACGATGTTGCTCTGCTTCTGCGGCCCGTTCCCACCTAG

Upstream 100 bases:

>100_bases
AGACCGCCGGGTTGGAGCCTGAGGCCTTGCGCGACTTCTATATCCCTTACCTGTAACCGCCAGAGCTTGCTCCGTCACGC
ACCGCTCGCTAGGCTTTGGG

Downstream 100 bases:

>100_bases
CGCAATGCCGTTCCGAGCCCGTCCCGCGCCTGTAAAACGCCTGCCCGATCGCGGGTTGTCGTGAAGGACACCGCGCGCGC
TTAATCCAGGCCCATCGGAC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 664; Mature: 664

Protein sequence:

>664_residues
MDKIDQTPRIDQFAAARKLHTPIWLYDIDACRILHANRAACALWHARSEEELQNRDLAQDMSATVAKRLAQYKADFIARD
ATFNEMWTLFPDGVPTSVMVLFSGFRLLDGRMAMQCEVLGAPDPLPDNLRSAEALLHTDVMITLFREDGVPLYMNPAARN
MVGEASAPLRDLLVTRTDYDTMVSGLAKGGEHRQVAEIQTKTGTRWFDISAKRCRDAATGDPAVLVTAIDVSELKRARDQ
ARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRFKQINDTYGHVIGDRVLMAMADRAIQLTQDTDAVVRL
GGDEFVVVLGATDAASRLERVERFFKALSAPTDFASITVNSRVSLGVSVFDPTQTDVDVALRHADIALYLAKNTGRNRYV
VYDDQMGEEADKRSRTEAEIESALNAQQFELYYQPRVDLASGRIVAVEGLARWRHPDRGFVPPDEFIPICEETGLIHLLG
RRVLEMGFAQAIAWSEAGLDVQLSLNISPRQFSDPQLLDNLKAYADRPDFPTHKIELEITESVLIGDQDGIAAKLHAITA
MGYQISIDDFGTGYSNLSYISRFPLHCLKIDRSFIEQLPASGPIVRLILALAQELGVTSVAEGVETQAQFDWLTSHGCTQ
IQGYFVAHPAPADDVALLLRPVPT

Sequences:

>Translated_664_residues
MDKIDQTPRIDQFAAARKLHTPIWLYDIDACRILHANRAACALWHARSEEELQNRDLAQDMSATVAKRLAQYKADFIARD
ATFNEMWTLFPDGVPTSVMVLFSGFRLLDGRMAMQCEVLGAPDPLPDNLRSAEALLHTDVMITLFREDGVPLYMNPAARN
MVGEASAPLRDLLVTRTDYDTMVSGLAKGGEHRQVAEIQTKTGTRWFDISAKRCRDAATGDPAVLVTAIDVSELKRARDQ
ARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRFKQINDTYGHVIGDRVLMAMADRAIQLTQDTDAVVRL
GGDEFVVVLGATDAASRLERVERFFKALSAPTDFASITVNSRVSLGVSVFDPTQTDVDVALRHADIALYLAKNTGRNRYV
VYDDQMGEEADKRSRTEAEIESALNAQQFELYYQPRVDLASGRIVAVEGLARWRHPDRGFVPPDEFIPICEETGLIHLLG
RRVLEMGFAQAIAWSEAGLDVQLSLNISPRQFSDPQLLDNLKAYADRPDFPTHKIELEITESVLIGDQDGIAAKLHAITA
MGYQISIDDFGTGYSNLSYISRFPLHCLKIDRSFIEQLPASGPIVRLILALAQELGVTSVAEGVETQAQFDWLTSHGCTQ
IQGYFVAHPAPADDVALLLRPVPT
>Mature_664_residues
MDKIDQTPRIDQFAAARKLHTPIWLYDIDACRILHANRAACALWHARSEEELQNRDLAQDMSATVAKRLAQYKADFIARD
ATFNEMWTLFPDGVPTSVMVLFSGFRLLDGRMAMQCEVLGAPDPLPDNLRSAEALLHTDVMITLFREDGVPLYMNPAARN
MVGEASAPLRDLLVTRTDYDTMVSGLAKGGEHRQVAEIQTKTGTRWFDISAKRCRDAATGDPAVLVTAIDVSELKRARDQ
ARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRFKQINDTYGHVIGDRVLMAMADRAIQLTQDTDAVVRL
GGDEFVVVLGATDAASRLERVERFFKALSAPTDFASITVNSRVSLGVSVFDPTQTDVDVALRHADIALYLAKNTGRNRYV
VYDDQMGEEADKRSRTEAEIESALNAQQFELYYQPRVDLASGRIVAVEGLARWRHPDRGFVPPDEFIPICEETGLIHLLG
RRVLEMGFAQAIAWSEAGLDVQLSLNISPRQFSDPQLLDNLKAYADRPDFPTHKIELEITESVLIGDQDGIAAKLHAITA
MGYQISIDDFGTGYSNLSYISRFPLHCLKIDRSFIEQLPASGPIVRLILALAQELGVTSVAEGVETQAQFDWLTSHGCTQ
IQGYFVAHPAPADDVALLLRPVPT

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=460, Percent_Identity=32.6086956521739, Blast_Score=272, Evalue=4e-74,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=29.7423887587822, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI226510982, Length=359, Percent_Identity=30.6406685236769, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=37.3540856031128, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=34.1666666666667, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=36.6255144032922, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=32.1705426356589, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=35.1464435146443, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787055, Length=322, Percent_Identity=29.1925465838509, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=31.6872427983539, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788381, Length=535, Percent_Identity=24.1121495327103, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=36.9318181818182, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87082096, Length=443, Percent_Identity=24.1534988713318, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=37.5, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=37.8048780487805, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787262, Length=182, Percent_Identity=32.4175824175824, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=30.7262569832402, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=34.1463414634146, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788849, Length=247, Percent_Identity=27.1255060728745, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=33.5329341317365, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=33.8888888888889, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787410, Length=219, Percent_Identity=30.1369863013699, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=100, Percent_Identity=40, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787056, Length=178, Percent_Identity=32.0224719101124, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789650, Length=453, Percent_Identity=20.7505518763797, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=29.2682926829268, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=30.379746835443, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 73877; Mature: 73877

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIDQTPRIDQFAAARKLHTPIWLYDIDACRILHANRAACALWHARSEEELQNRDLAQD
CCCCCCCCCHHHHHHHHHHCCCEEEEECCCEEEEECCCCEEEEECCCCHHHHHHHHHHHH
MSATVAKRLAQYKADFIARDATFNEMWTLFPDGVPTSVMVLFSGFRLLDGRMAMQCEVLG
HHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCHHHHHHHHCHHHCCCCEEEEEEEEC
APDPLPDNLRSAEALLHTDVMITLFREDGVPLYMNPAARNMVGEASAPLRDLLVTRTDYD
CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCEEECHHHHHHCCCCCCCHHHHHEECCCHH
TMVSGLAKGGEHRQVAEIQTKTGTRWFDISAKRCRDAATGDPAVLVTAIDVSELKRARDQ
HHHHHHHCCCCCCCHHHHHHCCCCEEEECCHHHHCCCCCCCCEEEEEECCHHHHHHHHHH
ARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRFKQINDTYGHVIGDRVL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
MAMADRAIQLTQDTDAVVRLGGDEFVVVLGATDAASRLERVERFFKALSAPTDFASITVN
HHHHHHHEEEECCCCEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEC
SRVSLGVSVFDPTQTDVDVALRHADIALYLAKNTGRNRYVVYDDQMGEEADKRSRTEAEI
CEEEEEEEEECCCCCCHHHHEEECEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
ESALNAQQFELYYQPRVDLASGRIVAVEGLARWRHPDRGFVPPDEFIPICEETGLIHLLG
HHHCCCEEEEEEECCCEECCCCCEEEEECHHHHCCCCCCCCCCHHCCCCHHCCCHHHHHH
RRVLEMGFAQAIAWSEAGLDVQLSLNISPRQFSDPQLLDNLKAYADRPDFPTHKIELEIT
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEE
ESVLIGDQDGIAAKLHAITAMGYQISIDDFGTGYSNLSYISRFPLHCLKIDRSFIEQLPA
EEEEECCCCCCHHHHHHHEEECEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCC
SGPIVRLILALAQELGVTSVAEGVETQAQFDWLTSHGCTQIQGYFVAHPAPADDVALLLR
CCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCEECCEEEECCCCCCCCEEEEE
PVPT
CCCC
>Mature Secondary Structure
MDKIDQTPRIDQFAAARKLHTPIWLYDIDACRILHANRAACALWHARSEEELQNRDLAQD
CCCCCCCCCHHHHHHHHHHCCCEEEEECCCEEEEECCCCEEEEECCCCHHHHHHHHHHHH
MSATVAKRLAQYKADFIARDATFNEMWTLFPDGVPTSVMVLFSGFRLLDGRMAMQCEVLG
HHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCHHHHHHHHCHHHCCCCEEEEEEEEC
APDPLPDNLRSAEALLHTDVMITLFREDGVPLYMNPAARNMVGEASAPLRDLLVTRTDYD
CCCCCCCHHHHHHHHHHHCEEEEEEECCCCCEEECHHHHHHCCCCCCCHHHHHEECCCHH
TMVSGLAKGGEHRQVAEIQTKTGTRWFDISAKRCRDAATGDPAVLVTAIDVSELKRARDQ
HHHHHHHCCCCCCCHHHHHHCCCCEEEECCHHHHCCCCCCCCEEEEEECCHHHHHHHHHH
ARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRFKQINDTYGHVIGDRVL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
MAMADRAIQLTQDTDAVVRLGGDEFVVVLGATDAASRLERVERFFKALSAPTDFASITVN
HHHHHHHEEEECCCCEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEC
SRVSLGVSVFDPTQTDVDVALRHADIALYLAKNTGRNRYVVYDDQMGEEADKRSRTEAEI
CEEEEEEEEECCCCCCHHHHEEECEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
ESALNAQQFELYYQPRVDLASGRIVAVEGLARWRHPDRGFVPPDEFIPICEETGLIHLLG
HHHCCCEEEEEEECCCEECCCCCEEEEECHHHHCCCCCCCCCCHHCCCCHHCCCHHHHHH
RRVLEMGFAQAIAWSEAGLDVQLSLNISPRQFSDPQLLDNLKAYADRPDFPTHKIELEIT
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEE
ESVLIGDQDGIAAKLHAITAMGYQISIDDFGTGYSNLSYISRFPLHCLKIDRSFIEQLPA
EEEEECCCCCCHHHHHHHEEECEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCC
SGPIVRLILALAQELGVTSVAEGVETQAQFDWLTSHGCTQIQGYFVAHPAPADDVALLLR
CCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCEECCEEEECCCCCCCCEEEEE
PVPT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]