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The map label for this gene is ycjO [C]

Identifier: 89055394

GI number: 89055394

Start: 2923282

End: 2924148

Strand: Direct

Name: ycjO [C]

Synonym: Jann_2903

Alternate gene names: 89055394

Gene position: 2923282-2924148 (Clockwise)

Preceding gene: 89055393

Following gene: 89055395

Centisome position: 67.7

GC content: 59.63

Gene sequence:

>867_bases
ATGGCGACCCAGCATTCCCGATCAGCGGCGCGGATCATGATGGCCCCGGCGGTCTTCCTGCTTCTCGTCTGGATGCTCGT
GCCCCTGTGCATGACGCTGTGGTTCTCGGTCCGCGATTTCCGCCCCCTGCGCGGCGGCGACAATGGCTTCGTCGGGATGG
AGAATTTCATCCGCTTCGTGTCATCCAGTTCATTCTGGCCGGCTGTCATGACCACGCTCATCATCGTGGGCGGTGTTCTT
TTGATCTCCATCTGCCTTGGCGTTCTGCTGGCGATCCTTCTGGATCAGCCGATGTGGGGTCAGGGGGTCGTGCGGATCCT
GGTGATCGCGCCCTTCTTCGTCATGCCAACCGTGTCGGCGCTGGTGTGGAAAAACATGTTCATGGACCCGGTCAACGGCG
TCTTCAGCTACATCTGGCGATTTTTTGGAGCCGACCCGGTGGTCTGGTTATCGGAAATGCCAGTCTTCTCCATCGTGATG
ATCGTCTCCTGGCAATGGCTGCCGTTTGCGACGCTGATCCTTCTGACCGCGATCCAGTCGCTGGACAGTGAACAGCTGGA
AGCGGCCGAGATGGACGGGGCCGGGCCGTTTTCCCGCTTTGGCTTCATCACGCTCCCGCACCTGAGCCGCGCGATCACCA
TCGTGATCCTGATCCAGACGATCTTCCTGCTGGCCGTCTTCGCCGAAATCTTCGTGACCACCGGCGGCGCGTTCGGCACC
CGGACCCTGACCTATCTGATCTACCAGCGCGTACTAGAAAGCCAGAACGTCGGCCTGGGATCTGCGGGCGGCGTCTATGC
CATCATTCTTGCCAATATCGTTGCCATCTTCCTGATGCGCATCGTCGGCAAAAACCTGGATAAGTGA

Upstream 100 bases:

>100_bases
CGGCGCGTGTAGCCGCCTTCCACCCCCTCTGCTAAACTTTCCGATCATTCCCCAATCTGGTTCCCCGGGCCTGTCGGCCT
GAACGAGGAGGATATGTGCG

Downstream 100 bases:

>100_bases
GGGACTGGATATGGCTAGAGCTGTCACAAACCAACGCAAGGCCCTGAACACGGCGATCGCGTGGATCATCGGCCTGATGA
TCTTCTTCCCCATCCTCTGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MATQHSRSAARIMMAPAVFLLLVWMLVPLCMTLWFSVRDFRPLRGGDNGFVGMENFIRFVSSSSFWPAVMTTLIIVGGVL
LISICLGVLLAILLDQPMWGQGVVRILVIAPFFVMPTVSALVWKNMFMDPVNGVFSYIWRFFGADPVVWLSEMPVFSIVM
IVSWQWLPFATLILLTAIQSLDSEQLEAAEMDGAGPFSRFGFITLPHLSRAITIVILIQTIFLLAVFAEIFVTTGGAFGT
RTLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDK

Sequences:

>Translated_288_residues
MATQHSRSAARIMMAPAVFLLLVWMLVPLCMTLWFSVRDFRPLRGGDNGFVGMENFIRFVSSSSFWPAVMTTLIIVGGVL
LISICLGVLLAILLDQPMWGQGVVRILVIAPFFVMPTVSALVWKNMFMDPVNGVFSYIWRFFGADPVVWLSEMPVFSIVM
IVSWQWLPFATLILLTAIQSLDSEQLEAAEMDGAGPFSRFGFITLPHLSRAITIVILIQTIFLLAVFAEIFVTTGGAFGT
RTLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDK
>Mature_287_residues
ATQHSRSAARIMMAPAVFLLLVWMLVPLCMTLWFSVRDFRPLRGGDNGFVGMENFIRFVSSSSFWPAVMTTLIIVGGVLL
ISICLGVLLAILLDQPMWGQGVVRILVIAPFFVMPTVSALVWKNMFMDPVNGVFSYIWRFFGADPVVWLSEMPVFSIVMI
VSWQWLPFATLILLTAIQSLDSEQLEAAEMDGAGPFSRFGFITLPHLSRAITIVILIQTIFLLAVFAEIFVTTGGAFGTR
TLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=252, Percent_Identity=26.1904761904762, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789861, Length=294, Percent_Identity=25.8503401360544, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790465, Length=210, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31898; Mature: 31767

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATQHSRSAARIMMAPAVFLLLVWMLVPLCMTLWFSVRDFRPLRGGDNGFVGMENFIRFV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
SSSSFWPAVMTTLIIVGGVLLISICLGVLLAILLDQPMWGQGVVRILVIAPFFVMPTVSA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMDPVNGVFSYIWRFFGADPVVWLSEMPVFSIVMIVSWQWLPFATLILLTAIQS
HHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
LDSEQLEAAEMDGAGPFSRFGFITLPHLSRAITIVILIQTIFLLAVFAEIFVTTGGAFGT
CCHHHHHHHHCCCCCCHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
RTLTYLIYQRVLESQNVGLGSAGGVYAIILANIVAIFLMRIVGKNLDK
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]