| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055384
Identifier: 89055384
GI number: 89055384
Start: 2912400
End: 2913338
Strand: Direct
Name: 89055384
Synonym: Jann_2893
Alternate gene names: NA
Gene position: 2912400-2913338 (Clockwise)
Preceding gene: 89055381
Following gene: 89055385
Centisome position: 67.45
GC content: 57.93
Gene sequence:
>939_bases TTGGCAAGGCAGACAAAGACACTCGAATACAGACGCGCACGTTTCCTAGACGACGGGCAGAACCTAGAGGCGCTGGTGCG GCAAGCATGGGGCCAATTCGGAACGCAGGCGGAGCGGACGATCACTTTCAGCGACGACAGGTCAAGCTGCGGCCTCCGGG CTCGGGACTGCAACGCCAACGGGTTCGCCGTTCACTGCGGACGCTACACCGATGGTCAAGGCGTCGGTACAATTCCGACC GTCCCCGCGCCTGAGGTTGAGGTGGGAGAGCGCCCGCCCGAGCCGGGTGAGAATTTTCTCAACTCTGACTTGATGGCGCT CATCTCCGGCAACCATGTCATCTGCATGAACTGCGGCCGCAACGCGGGCTCACTGCGCATCTACCTGCAACAGCTATTCC GCAAAGCCGGTATGCCCGACGAGTCCCGACAATTTGAACTTGTCCGCATCGGGAGCCCGGACAAACTCGCCATCATCGAA GCCGTGGGCGTTAAGAGCATCGACCTTGAGGTGGACATCTCCGAGGCCACGGCATTTGAGGTGGTCGAAGGCGACGGTGG CGGAGGCATTTGGCAGTCGATCAAGCAAAACTTTGGCAACGCGCTTGCGGCAGTGACGGCGCGGGACGAATCGGTGGAAC AATTGCGGACCGCCGAACGTGGCACCATGAAGGTTTCGATCAATGTGCCCAAGGGAGACCTAGACGCAGCGAAACACGGG CTGGACGACTTTGCCGAGGAAGTGGTCGAGGATGAGGAGTCAGACGCATTCACGATTCACCTGCGGGACGGAAGGACGAC CATTAAACCGAACGAGGTTTCTGTGCGAAAACAGGTTAAGCTCGAAACGGCGGCAAACTCAGTAAGTGTTTTTCAAGCAT GGGATGCGATGGAGACTTATATGGGTGAACTGAATGAAAATGGACAGATAGAGGCGTAA
Upstream 100 bases:
>100_bases CTCACCGCGAAACTCAACCCATTGTTGTGCGCAGCCAGCGAACCTCTATATTTGCCAAGATCAGGCAAGAATATTGGCGA TTCACAAGGAGCAATTCAAT
Downstream 100 bases:
>100_bases ATTGGAGCTATTGAAGCGAACGGACTGGTGGAGGTTGACGCAACTCGTTGTGGCAATCGGCGTGTCCAGCTTCATCGGCT ACCGTTTCCAGCCTATGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MARQTKTLEYRRARFLDDGQNLEALVRQAWGQFGTQAERTITFSDDRSSCGLRARDCNANGFAVHCGRYTDGQGVGTIPT VPAPEVEVGERPPEPGENFLNSDLMALISGNHVICMNCGRNAGSLRIYLQQLFRKAGMPDESRQFELVRIGSPDKLAIIE AVGVKSIDLEVDISEATAFEVVEGDGGGGIWQSIKQNFGNALAAVTARDESVEQLRTAERGTMKVSINVPKGDLDAAKHG LDDFAEEVVEDEESDAFTIHLRDGRTTIKPNEVSVRKQVKLETAANSVSVFQAWDAMETYMGELNENGQIEA
Sequences:
>Translated_312_residues MARQTKTLEYRRARFLDDGQNLEALVRQAWGQFGTQAERTITFSDDRSSCGLRARDCNANGFAVHCGRYTDGQGVGTIPT VPAPEVEVGERPPEPGENFLNSDLMALISGNHVICMNCGRNAGSLRIYLQQLFRKAGMPDESRQFELVRIGSPDKLAIIE AVGVKSIDLEVDISEATAFEVVEGDGGGGIWQSIKQNFGNALAAVTARDESVEQLRTAERGTMKVSINVPKGDLDAAKHG LDDFAEEVVEDEESDAFTIHLRDGRTTIKPNEVSVRKQVKLETAANSVSVFQAWDAMETYMGELNENGQIEA >Mature_311_residues ARQTKTLEYRRARFLDDGQNLEALVRQAWGQFGTQAERTITFSDDRSSCGLRARDCNANGFAVHCGRYTDGQGVGTIPTV PAPEVEVGERPPEPGENFLNSDLMALISGNHVICMNCGRNAGSLRIYLQQLFRKAGMPDESRQFELVRIGSPDKLAIIEA VGVKSIDLEVDISEATAFEVVEGDGGGGIWQSIKQNFGNALAAVTARDESVEQLRTAERGTMKVSINVPKGDLDAAKHGL DDFAEEVVEDEESDAFTIHLRDGRTTIKPNEVSVRKQVKLETAANSVSVFQAWDAMETYMGELNENGQIEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34142; Mature: 34011
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQTKTLEYRRARFLDDGQNLEALVRQAWGQFGTQAERTITFSDDRSSCGLRARDCNAN CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEECCCCC GFAVHCGRYTDGQGVGTIPTVPAPEVEVGERPPEPGENFLNSDLMALISGNHVICMNCGR CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEECCCEEEEEECCC NAGSLRIYLQQLFRKAGMPDESRQFELVRIGSPDKLAIIEAVGVKSIDLEVDISEATAFE CCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCEEE VVEGDGGGGIWQSIKQNFGNALAAVTARDESVEQLRTAERGTMKVSINVPKGDLDAAKHG EEECCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHCC LDDFAEEVVEDEESDAFTIHLRDGRTTIKPNEVSVRKQVKLETAANSVSVFQAWDAMETY HHHHHHHHHCCCCCCEEEEEEECCCCEECCCCCCHHHHEEEHHHCCCHHHHHHHHHHHHH MGELNENGQIEA HHHCCCCCCCCC >Mature Secondary Structure ARQTKTLEYRRARFLDDGQNLEALVRQAWGQFGTQAERTITFSDDRSSCGLRARDCNAN CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEECCCCC GFAVHCGRYTDGQGVGTIPTVPAPEVEVGERPPEPGENFLNSDLMALISGNHVICMNCGR CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEECCCEEEEEECCC NAGSLRIYLQQLFRKAGMPDESRQFELVRIGSPDKLAIIEAVGVKSIDLEVDISEATAFE CCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCEEE VVEGDGGGGIWQSIKQNFGNALAAVTARDESVEQLRTAERGTMKVSINVPKGDLDAAKHG EEECCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHCC LDDFAEEVVEDEESDAFTIHLRDGRTTIKPNEVSVRKQVKLETAANSVSVFQAWDAMETY HHHHHHHHHCCCCCCEEEEEEECCCCEECCCCCCHHHHEEEHHHCCCHHHHHHHHHHHHH MGELNENGQIEA HHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA