Click here to switch to the map view.

The map label for this gene is ybiA [H]

Identifier: 89055288

GI number: 89055288

Start: 2811971

End: 2812423

Strand: Direct

Name: ybiA [H]

Synonym: Jann_2797

Alternate gene names: 89055288

Gene position: 2811971-2812423 (Clockwise)

Preceding gene: 89055287

Following gene: 89055293

Centisome position: 65.12

GC content: 60.93

Gene sequence:

>453_bases
GTGACGGGACCGCAATTAAACACAATCTATTTCTACGCCCAAACCGACGCCTATGCGGAATTCTCCAATTTCGCGCCCTT
CGGGGTCGAGATGGAGGGCGTCTACTGGCGCACGGTCGAACATTACTTTCAGGCCATGAAATTTGACGACGCCACCCACC
GAGAGCGGATCCGTACCGCGCGAAAACCCAAGGACGCCAAGGCGTCGGGCATGACACGGGCTGTGGCTCTGCGCGCGGAT
TGGGACGAGGTGAAGGACGCCATCATGCAGGCTGCCGTCTTCCGGAAGTTTCAGACCCACGCCGTCCCGCGCGATCTTTT
GCTGGGAACCGGATCCGCACAGATCGTGGAAAACGCGCCGATGGATGCCTATTGGGGCTGCGGGCCGGACGGGCGCGGCC
TCAATAAACTTGGGCGCATCCTGATGGATGTCCGGGACAGCCTGGCCAGCTAG

Upstream 100 bases:

>100_bases
TGTTAGTGATGTGCGCCGCGCGGGACGTGAGCCTGTCGGATATCGAAGCGGAACTTGAAAGCCGCCATGGCACGTCCGGG
CTGACCGAGAAAGCAAACCG

Downstream 100 bases:

>100_bases
ACCGGGCGCGATCACAGCTTTGAGCTGACGATCCCGGTGTTGAACCCGCCCATCCGCAACTCTCCGAACAGGCGCTGATA
TTCGATCTTGGGGCAGCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MTGPQLNTIYFYAQTDAYAEFSNFAPFGVEMEGVYWRTVEHYFQAMKFDDATHRERIRTARKPKDAKASGMTRAVALRAD
WDEVKDAIMQAAVFRKFQTHAVPRDLLLGTGSAQIVENAPMDAYWGCGPDGRGLNKLGRILMDVRDSLAS

Sequences:

>Translated_150_residues
MTGPQLNTIYFYAQTDAYAEFSNFAPFGVEMEGVYWRTVEHYFQAMKFDDATHRERIRTARKPKDAKASGMTRAVALRAD
WDEVKDAIMQAAVFRKFQTHAVPRDLLLGTGSAQIVENAPMDAYWGCGPDGRGLNKLGRILMDVRDSLAS
>Mature_149_residues
TGPQLNTIYFYAQTDAYAEFSNFAPFGVEMEGVYWRTVEHYFQAMKFDDATHRERIRTARKPKDAKASGMTRAVALRADW
DEVKDAIMQAAVFRKFQTHAVPRDLLLGTGSAQIVENAPMDAYWGCGPDGRGLNKLGRILMDVRDSLAS

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=145, Percent_Identity=45.5172413793103, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 16901; Mature: 16770

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPQLNTIYFYAQTDAYAEFSNFAPFGVEMEGVYWRTVEHYFQAMKFDDATHRERIRTA
CCCCCCEEEEEEECCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHH
RKPKDAKASGMTRAVALRADWDEVKDAIMQAAVFRKFQTHAVPRDLLLGTGSAQIVENAP
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCHHHHCCCC
MDAYWGCGPDGRGLNKLGRILMDVRDSLAS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGPQLNTIYFYAQTDAYAEFSNFAPFGVEMEGVYWRTVEHYFQAMKFDDATHRERIRTA
CCCCCEEEEEEECCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHH
RKPKDAKASGMTRAVALRADWDEVKDAIMQAAVFRKFQTHAVPRDLLLGTGSAQIVENAP
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCHHHHCCCC
MDAYWGCGPDGRGLNKLGRILMDVRDSLAS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]