| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055176
Identifier: 89055176
GI number: 89055176
Start: 2695263
End: 2696447
Strand: Direct
Name: 89055176
Synonym: Jann_2685
Alternate gene names: NA
Gene position: 2695263-2696447 (Clockwise)
Preceding gene: 89055175
Following gene: 89055178
Centisome position: 62.42
GC content: 61.35
Gene sequence:
>1185_bases ATGTTCCTGCCCTTCTTCCAGACCCTCCGCATGGCCCGCATCCCGGTGTCCTTGCGGGAATATCTTGCGTTTTTGGACGG CGTCTCGGCGGGTCTTGTGACCTACGACATCGACGGTTTCTACTACCTTGCGCGCACGGCGATGGTGAAGGATGAACGGC ATCTTGACCGCTTCGACCAGGCCTTTGCCCATAGCTTTGGCGGGCTGGAGGCGATCAGCGCCGAGGACGTGCTGGAGGCC ACGGAAATCCCCCGGGACTGGCTGGAAAAGCTCGCCGAAAAGCACCTGTCCGAGGAAGAACGCGCCGAGATTGAGGCCCT TGGCGGCTTCGACAAGCTGATGGAAACCCTGCGCGAGCGGTTGAAGGAGCAGGAGAAGCGGCATCAGGGCGGGTCCAAAT GGATCGGAACGGCGGGGACGTCCCCGTTCGGGGCCTATGGCTACAATCCCGAAGGCGTGCGGATCGGGCAACATGAATCT AGGCATCGGCGCGCCGTAAAGGTCTGGGACAAAAGGGATTTCAAGAATCTTGACGGCGATGTGGAGCTGGGAACGCGCAA CATCAAGGTGGCCCTGAAGCGCCTGCGCCAATGGGCAAGGGACGGCGCGGCGGAAGAGTTGGATCTGGACGGCACGATCC GCGCGACGGCGGAACAGGGTTGGCTGGACGTCAAAACCCGGCCCGAGCGGCGCAATGCGGTCAAGGTGATCCTGTTCCTC GACGTGGGCGGGTCCATGGACGATCATGTGAAAGTGGTCGAGGAGCTGTTCAGCGCCGCGAAGGCCGAGTTCAAGCACCT GGAATACTATTATTTCCACAACTGCCTGTACGAGTCCGTCTGGCGCGACAACCGAAGACGCTGGACCGAGACGATCCCGA CCTTCGAGGTCATGAACACCTACGGCCCTGATTACAAATGCATATTCGTGGGCGACGCGGCGATGTCACCCTATGAGGTC GCGTTCGCGGGCGGCGCCAATGAACATTGGAACGAGGAGCCCGGCAGCACCTGGCTCCAACGCGCCCGCACCCAATGGCC CGATCACATGTGGATCAACCCTACGCCTGAGCGGCACTGGCGCTACACGCAGTCGACCCAGATGATTTCCGAGATTTTCG AGGGCCGCATGGTCCCGATGACGCTGGAAGGCCTTGACCGGGGGATGCGCGATCTGGGTCGATAA
Upstream 100 bases:
>100_bases GATATGGCCCAATATGGCGCTGTCTTTGCGGTGATCGGCTTCCTGATCGGGACGCTCATCATGCTTGTGGTCCCTGCCCC GCAGTAGCTAGACTGCGCCC
Downstream 100 bases:
>100_bases GCCACAAAAAACCGCCGCACCCTTTGGGGCACGGCGGCTTCGATCTAAAGTTCAACTTCGGTCGTTAGGCTGTCTTCTGA CGGCGGCGCATCACGCCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Cytoplasmic Protein; Von Willebrand Factor Type A(VWA) Domain Protein; VWA Containing CoxE-Like Family Protein
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MFLPFFQTLRMARIPVSLREYLAFLDGVSAGLVTYDIDGFYYLARTAMVKDERHLDRFDQAFAHSFGGLEAISAEDVLEA TEIPRDWLEKLAEKHLSEEERAEIEALGGFDKLMETLRERLKEQEKRHQGGSKWIGTAGTSPFGAYGYNPEGVRIGQHES RHRRAVKVWDKRDFKNLDGDVELGTRNIKVALKRLRQWARDGAAEELDLDGTIRATAEQGWLDVKTRPERRNAVKVILFL DVGGSMDDHVKVVEELFSAAKAEFKHLEYYYFHNCLYESVWRDNRRRWTETIPTFEVMNTYGPDYKCIFVGDAAMSPYEV AFAGGANEHWNEEPGSTWLQRARTQWPDHMWINPTPERHWRYTQSTQMISEIFEGRMVPMTLEGLDRGMRDLGR
Sequences:
>Translated_394_residues MFLPFFQTLRMARIPVSLREYLAFLDGVSAGLVTYDIDGFYYLARTAMVKDERHLDRFDQAFAHSFGGLEAISAEDVLEA TEIPRDWLEKLAEKHLSEEERAEIEALGGFDKLMETLRERLKEQEKRHQGGSKWIGTAGTSPFGAYGYNPEGVRIGQHES RHRRAVKVWDKRDFKNLDGDVELGTRNIKVALKRLRQWARDGAAEELDLDGTIRATAEQGWLDVKTRPERRNAVKVILFL DVGGSMDDHVKVVEELFSAAKAEFKHLEYYYFHNCLYESVWRDNRRRWTETIPTFEVMNTYGPDYKCIFVGDAAMSPYEV AFAGGANEHWNEEPGSTWLQRARTQWPDHMWINPTPERHWRYTQSTQMISEIFEGRMVPMTLEGLDRGMRDLGR >Mature_394_residues MFLPFFQTLRMARIPVSLREYLAFLDGVSAGLVTYDIDGFYYLARTAMVKDERHLDRFDQAFAHSFGGLEAISAEDVLEA TEIPRDWLEKLAEKHLSEEERAEIEALGGFDKLMETLRERLKEQEKRHQGGSKWIGTAGTSPFGAYGYNPEGVRIGQHES RHRRAVKVWDKRDFKNLDGDVELGTRNIKVALKRLRQWARDGAAEELDLDGTIRATAEQGWLDVKTRPERRNAVKVILFL DVGGSMDDHVKVVEELFSAAKAEFKHLEYYYFHNCLYESVWRDNRRRWTETIPTFEVMNTYGPDYKCIFVGDAAMSPYEV AFAGGANEHWNEEPGSTWLQRARTQWPDHMWINPTPERHWRYTQSTQMISEIFEGRMVPMTLEGLDRGMRDLGR
Specific function: Unknown
COG id: COG3825
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45713; Mature: 45713
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLPFFQTLRMARIPVSLREYLAFLDGVSAGLVTYDIDGFYYLARTAMVKDERHLDRFDQ CCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH AFAHSFGGLEAISAEDVLEATEIPRDWLEKLAEKHLSEEERAEIEALGGFDKLMETLRER HHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH LKEQEKRHQGGSKWIGTAGTSPFGAYGYNPEGVRIGQHESRHRRAVKVWDKRDFKNLDGD HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCC VELGTRNIKVALKRLRQWARDGAAEELDLDGTIRATAEQGWLDVKTRPERRNAVKVILFL EEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCEEEEEEEE DVGGSMDDHVKVVEELFSAAKAEFKHLEYYYFHNCLYESVWRDNRRRWTETIPTFEVMNT ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC YGPDYKCIFVGDAAMSPYEVAFAGGANEHWNEEPGSTWLQRARTQWPDHMWINPTPERHW CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHC RYTQSTQMISEIFEGRMVPMTLEGLDRGMRDLGR CHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCC >Mature Secondary Structure MFLPFFQTLRMARIPVSLREYLAFLDGVSAGLVTYDIDGFYYLARTAMVKDERHLDRFDQ CCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH AFAHSFGGLEAISAEDVLEATEIPRDWLEKLAEKHLSEEERAEIEALGGFDKLMETLRER HHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH LKEQEKRHQGGSKWIGTAGTSPFGAYGYNPEGVRIGQHESRHRRAVKVWDKRDFKNLDGD HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCC VELGTRNIKVALKRLRQWARDGAAEELDLDGTIRATAEQGWLDVKTRPERRNAVKVILFL EEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCEEEEEEEE DVGGSMDDHVKVVEELFSAAKAEFKHLEYYYFHNCLYESVWRDNRRRWTETIPTFEVMNT ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC YGPDYKCIFVGDAAMSPYEVAFAGGANEHWNEEPGSTWLQRARTQWPDHMWINPTPERHW CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHC RYTQSTQMISEIFEGRMVPMTLEGLDRGMRDLGR CHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA