| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055175
Identifier: 89055175
GI number: 89055175
Start: 2693703
End: 2695070
Strand: Direct
Name: 89055175
Synonym: Jann_2684
Alternate gene names: NA
Gene position: 2693703-2695070 (Clockwise)
Preceding gene: 89055174
Following gene: 89055176
Centisome position: 62.38
GC content: 67.18
Gene sequence:
>1368_bases TTGTCCCGTTTCCTAACCCTCGCGGCCCCCGTTCTTGCCCTTGCCCTCGCGGCCTGTGCGCCCTCTTCCAGCACGGATGT GCCGGCGCGGGCCTCCGCCGCCCTGCCCGGCGCATTGCCTGCGATGAACACGTTTGGCCGAACGCGCGTGGACGCCCCGT CGCGGTCCAACACATCGATTGCCGCCGATTTCCTGGACCTCAGCTTCCAGATGGAATCGGGCCGCGTGATTGAACGGATG AGCCGTTTTGAGGGGCCGATTACCGTGGCCGTCGCCTCCGGCGCGCCCGCCTCGCTCAACGCCGATCTGGATCTGCTGAT CAGCCGTCTGCGCAATGAGGCCGACATCAACATCGCACGCGCCACCTCCGGCGCGGCGTCGATCACGATCGAGACGATGC CCCGCGCACGTATGCAACGGGTGGTGCCGCAAGCCGCCTGTTTCGTGGTGCCGCGCGTCAGTTCCTGGACCGAGTTCCGG CGCGCGCGATCAGGCCGGACGCTGGATTGGACAACGCTGGACACGCGCGAACGGGTGGCCGTCTTCATCCCGTCTGACGT CTCCCCGCAAGAGGTGCGTGATTGCCTCCACGAAGAGATTGCGCAGGCCCTCGGGCCGCTGAACGACCTGTACCGCCTGT CAGATTCGGTCTTCAACGACGATAACTTCAATGCGATCCTGACCGGTTTCGATATGGTCATCCTGCGCGCCTATTATGAC GATGCGCTGCGATCTGGCATGACGCGGGGCCAGGTGGCCGCGGCCCTGCCCGGCATCCTGTCGCGGATCAACCCGCGTGG CGGAAGTGCGTCTGGCGGGACCGGATCGCCCACACCGCGCCAATGGATCACCGAGATTGAGGCCGCCCTTGGGCCCGGAT CGTCGGACGCGGATCGCATCATTGCCGCCGAACGCGCGGTCCGTCTGGCGCAACAACAGCGCTGGACCGACACACGCCTG GCCTTCAGCTACTTCGCCCTGGGTCGCCTGACCCTGTCGCGCGATGTGGAAACCTCGATCCAGGCGTTCCAATCGGCCTC CACCATCTTCGACCGCACCGCGCCCGGCGGCATCCAATCGGCCCATGTTGACATGCAACTGGCCGCCTTCGCCCTCTCCG CTGGTCGTATGACCGAGGCGTTGCGCCTGACCGAACGGGCCCTGCCTGCGGCGACGCGGGCGCAGAACGCCTCCCTCCTG TCTACCCTACTGATGATCCGTGCCGAGGCGCTGGATGACGCCGGCCGCGCGTCCGAGGCCCGCAGCGTCCGCCTTGATAG CCTGGCGTGGGGCCGTTATGGCTTCGGCTCAAACGCGGCGGTGGGCGCGCGCCTGACAGAGGTCGCGGCACTCTCCCCCG GACGGTAG
Upstream 100 bases:
>100_bases GGATGACACAACGCGCCAATGCGACGGCGCGAACACTCTACGATCGGATCGGACAACCGACTGATTTCATGAAATATTCT AGATCTTGAAGGAGGGGCAT
Downstream 100 bases:
>100_bases TTGGGGCGAAGCAGATGCTGAATTTCATTGGCGCAGGCCTGGGCGTGATCGCAGGCGTGATCCTGGCCCGGATGCGGGGC GGCAACCGCGCGGATATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 455; Mature: 454
Protein sequence:
>455_residues MSRFLTLAAPVLALALAACAPSSSTDVPARASAALPGALPAMNTFGRTRVDAPSRSNTSIAADFLDLSFQMESGRVIERM SRFEGPITVAVASGAPASLNADLDLLISRLRNEADINIARATSGAASITIETMPRARMQRVVPQAACFVVPRVSSWTEFR RARSGRTLDWTTLDTRERVAVFIPSDVSPQEVRDCLHEEIAQALGPLNDLYRLSDSVFNDDNFNAILTGFDMVILRAYYD DALRSGMTRGQVAAALPGILSRINPRGGSASGGTGSPTPRQWITEIEAALGPGSSDADRIIAAERAVRLAQQQRWTDTRL AFSYFALGRLTLSRDVETSIQAFQSASTIFDRTAPGGIQSAHVDMQLAAFALSAGRMTEALRLTERALPAATRAQNASLL STLLMIRAEALDDAGRASEARSVRLDSLAWGRYGFGSNAAVGARLTEVAALSPGR
Sequences:
>Translated_455_residues MSRFLTLAAPVLALALAACAPSSSTDVPARASAALPGALPAMNTFGRTRVDAPSRSNTSIAADFLDLSFQMESGRVIERM SRFEGPITVAVASGAPASLNADLDLLISRLRNEADINIARATSGAASITIETMPRARMQRVVPQAACFVVPRVSSWTEFR RARSGRTLDWTTLDTRERVAVFIPSDVSPQEVRDCLHEEIAQALGPLNDLYRLSDSVFNDDNFNAILTGFDMVILRAYYD DALRSGMTRGQVAAALPGILSRINPRGGSASGGTGSPTPRQWITEIEAALGPGSSDADRIIAAERAVRLAQQQRWTDTRL AFSYFALGRLTLSRDVETSIQAFQSASTIFDRTAPGGIQSAHVDMQLAAFALSAGRMTEALRLTERALPAATRAQNASLL STLLMIRAEALDDAGRASEARSVRLDSLAWGRYGFGSNAAVGARLTEVAALSPGR >Mature_454_residues SRFLTLAAPVLALALAACAPSSSTDVPARASAALPGALPAMNTFGRTRVDAPSRSNTSIAADFLDLSFQMESGRVIERMS RFEGPITVAVASGAPASLNADLDLLISRLRNEADINIARATSGAASITIETMPRARMQRVVPQAACFVVPRVSSWTEFRR ARSGRTLDWTTLDTRERVAVFIPSDVSPQEVRDCLHEEIAQALGPLNDLYRLSDSVFNDDNFNAILTGFDMVILRAYYDD ALRSGMTRGQVAAALPGILSRINPRGGSASGGTGSPTPRQWITEIEAALGPGSSDADRIIAAERAVRLAQQQRWTDTRLA FSYFALGRLTLSRDVETSIQAFQSASTIFDRTAPGGIQSAHVDMQLAAFALSAGRMTEALRLTERALPAATRAQNASLLS TLLMIRAEALDDAGRASEARSVRLDSLAWGRYGFGSNAAVGARLTEVAALSPGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48633; Mature: 48501
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFLTLAAPVLALALAACAPSSSTDVPARASAALPGALPAMNTFGRTRVDAPSRSNTSI CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHH AADFLDLSFQMESGRVIERMSRFEGPITVAVASGAPASLNADLDLLISRLRNEADINIAR HHHHHHHEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEE ATSGAASITIETMPRARMQRVVPQAACFVVPRVSSWTEFRRARSGRTLDWTTLDTRERVA ECCCCCEEEEECCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCEEEEECCCCCCEE VFIPSDVSPQEVRDCLHEEIAQALGPLNDLYRLSDSVFNDDNFNAILTGFDMVILRAYYD EEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH DALRSGMTRGQVAAALPGILSRINPRGGSASGGTGSPTPRQWITEIEAALGPGSSDADRI HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH IAAERAVRLAQQQRWTDTRLAFSYFALGRLTLSRDVETSIQAFQSASTIFDRTAPGGIQS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH AHVDMQLAAFALSAGRMTEALRLTERALPAATRAQNASLLSTLLMIRAEALDDAGRASEA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH RSVRLDSLAWGRYGFGSNAAVGARLTEVAALSPGR HHEEHHHEECCCCCCCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure SRFLTLAAPVLALALAACAPSSSTDVPARASAALPGALPAMNTFGRTRVDAPSRSNTSI CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHH AADFLDLSFQMESGRVIERMSRFEGPITVAVASGAPASLNADLDLLISRLRNEADINIAR HHHHHHHEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEE ATSGAASITIETMPRARMQRVVPQAACFVVPRVSSWTEFRRARSGRTLDWTTLDTRERVA ECCCCCEEEEECCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCEEEEECCCCCCEE VFIPSDVSPQEVRDCLHEEIAQALGPLNDLYRLSDSVFNDDNFNAILTGFDMVILRAYYD EEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH DALRSGMTRGQVAAALPGILSRINPRGGSASGGTGSPTPRQWITEIEAALGPGSSDADRI HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH IAAERAVRLAQQQRWTDTRLAFSYFALGRLTLSRDVETSIQAFQSASTIFDRTAPGGIQS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH AHVDMQLAAFALSAGRMTEALRLTERALPAATRAQNASLLSTLLMIRAEALDDAGRASEA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH RSVRLDSLAWGRYGFGSNAAVGARLTEVAALSPGR HHEEHHHEECCCCCCCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA