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The map label for this gene is yliC [C]

Identifier: 89054955

GI number: 89054955

Start: 2458640

End: 2459749

Strand: Direct

Name: yliC [C]

Synonym: Jann_2464

Alternate gene names: 89054955

Gene position: 2458640-2459749 (Clockwise)

Preceding gene: 89054954

Following gene: 89054956

Centisome position: 56.94

GC content: 62.61

Gene sequence:

>1110_bases
ATGGGGGCTTTCATCCTGCGCCGGACCGGCGTGATGATCCTGACCGCGCTTTGCCTGACATTGGTGGTGTTTTTCCTCAC
CAACCTCTACCCGAACCTGGAAAAGCTGGCGAAAACCCAGGGCAATGCCCGCATGACCGACGACGAAGTCGTCAGTTGGC
TGGATCGCAACGGCTATGGTGGGCCCTTGCTGGTGCGCTACGGCGAATGGTTGGGCATCGTGCCCGGCTGGACCCGCGAA
GATCCCAACACCGGAGAGATCACCGGGCGCTGCATCGATTTCGGCATGGACCCCGCGGACGCCCCCACCCGCTGCGGGCT
GTTGCAGGGCGATCTGGGCTTTTCGACCGTTTCCGATGAAGACGTTGCCAACGTGCTGCCCACCCGCCTTCTGCTGACCC
TGAAACTCATGGGCTATGCCTTTGGCCTGATGGTGCCCGCCGCCCTTCTGGTGGGTGTGCTGGCGGGGATGCGGGAGGGC
TCTCGCCTCGACCGTTCGCTGTCGACCGTCTCCATCGCCTCGACCGCCACGCCGGAATATGTGTCGGGTGTGATTTTCAT
CGTGCTCTTTGCCTCCACCACGGCCGGCATGTCAGGCGCGCTGACGGAATGGGGCTGGCTTGGCGGCGATGGCTGGCTCG
GCGACCGCCGCACGCTGTTTCTGGGCTCTGCCCGCTCGGCGATGGAAGACATCACCTTCTGGAACTTCACCCTGCCCGTC
GTCACCATCGCGCTCTACGGCATGGGCTACATTGCCCGCATGACCCGTGCGTCGATGGCCGAGGTGATGACCGCGCAATA
TATCCGCACGGCACGCCTGAAGGGTGTCAGCTTCCGTAACATCGTCATGAAACACGCGCTCCGCAACGCGCTGATCGCGC
CCTTCACCGTCATCATGCTGCAATTCCCGTGGCTTCTGACCGGCGTGGTGATCGTGGAGACGTTGTTCAACTACAACGGC
TTCGGCTGGACCATGGTGCAGGCGGCGTCGAACAACGATATCGAGCTGCTTCTGGCCTGCTCCATCGTCGCGGTCTTCGT
GGTGCTGCTGACCCAGCTGATCTCGGATATCGGCTACGTCTTCCTCAACCCCCGCATTCGTATCGCGTGA

Upstream 100 bases:

>100_bases
ACCGCAACGGCCAAACCCCGCCCTGACCCGTCAGAGGTAGGGAGTGCCATCCAGGCATGCGTGCGCCGCGCGCTCGCCCA
GACAACAGGGGATATGATCC

Downstream 100 bases:

>100_bases
AGGAGCCTGATCCATGGAACCTCTGACCTGGTCCGGCTCTTTCGGAGCCTTCCTCAACCCCCTTATGCTCGTGGCGCTGG
CCATTTTCGTCCTGGGCTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MGAFILRRTGVMILTALCLTLVVFFLTNLYPNLEKLAKTQGNARMTDDEVVSWLDRNGYGGPLLVRYGEWLGIVPGWTRE
DPNTGEITGRCIDFGMDPADAPTRCGLLQGDLGFSTVSDEDVANVLPTRLLLTLKLMGYAFGLMVPAALLVGVLAGMREG
SRLDRSLSTVSIASTATPEYVSGVIFIVLFASTTAGMSGALTEWGWLGGDGWLGDRRTLFLGSARSAMEDITFWNFTLPV
VTIALYGMGYIARMTRASMAEVMTAQYIRTARLKGVSFRNIVMKHALRNALIAPFTVIMLQFPWLLTGVVIVETLFNYNG
FGWTMVQAASNNDIELLLACSIVAVFVVLLTQLISDIGYVFLNPRIRIA

Sequences:

>Translated_369_residues
MGAFILRRTGVMILTALCLTLVVFFLTNLYPNLEKLAKTQGNARMTDDEVVSWLDRNGYGGPLLVRYGEWLGIVPGWTRE
DPNTGEITGRCIDFGMDPADAPTRCGLLQGDLGFSTVSDEDVANVLPTRLLLTLKLMGYAFGLMVPAALLVGVLAGMREG
SRLDRSLSTVSIASTATPEYVSGVIFIVLFASTTAGMSGALTEWGWLGGDGWLGDRRTLFLGSARSAMEDITFWNFTLPV
VTIALYGMGYIARMTRASMAEVMTAQYIRTARLKGVSFRNIVMKHALRNALIAPFTVIMLQFPWLLTGVVIVETLFNYNG
FGWTMVQAASNNDIELLLACSIVAVFVVLLTQLISDIGYVFLNPRIRIA
>Mature_368_residues
GAFILRRTGVMILTALCLTLVVFFLTNLYPNLEKLAKTQGNARMTDDEVVSWLDRNGYGGPLLVRYGEWLGIVPGWTRED
PNTGEITGRCIDFGMDPADAPTRCGLLQGDLGFSTVSDEDVANVLPTRLLLTLKLMGYAFGLMVPAALLVGVLAGMREGS
RLDRSLSTVSIASTATPEYVSGVIFIVLFASTTAGMSGALTEWGWLGGDGWLGDRRTLFLGSARSAMEDITFWNFTLPVV
TIALYGMGYIARMTRASMAEVMTAQYIRTARLKGVSFRNIVMKHALRNALIAPFTVIMLQFPWLLTGVVIVETLFNYNGF
GWTMVQAASNNDIELLLACSIVAVFVVLLTQLISDIGYVFLNPRIRIA

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=263, Percent_Identity=30.7984790874525, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1789965, Length=382, Percent_Identity=26.1780104712042, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787497, Length=368, Percent_Identity=25, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788504, Length=389, Percent_Identity=25.9640102827763, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=27.2058823529412, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789888, Length=370, Percent_Identity=24.3243243243243, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787761, Length=270, Percent_Identity=31.4814814814815, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40356; Mature: 40225

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAFILRRTGVMILTALCLTLVVFFLTNLYPNLEKLAKTQGNARMTDDEVVSWLDRNGYG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC
GPLLVRYGEWLGIVPGWTREDPNTGEITGRCIDFGMDPADAPTRCGLLQGDLGFSTVSDE
CCEEEEECCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCH
DVANVLPTRLLLTLKLMGYAFGLMVPAALLVGVLAGMREGSRLDRSLSTVSIASTATPEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCHHH
VSGVIFIVLFASTTAGMSGALTEWGWLGGDGWLGDRRTLFLGSARSAMEDITFWNFTLPV
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
VTIALYGMGYIARMTRASMAEVMTAQYIRTARLKGVSFRNIVMKHALRNALIAPFTVIML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QFPWLLTGVVIVETLFNYNGFGWTMVQAASNNDIELLLACSIVAVFVVLLTQLISDIGYV
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEE
FLNPRIRIA
EECCCEEEC
>Mature Secondary Structure 
GAFILRRTGVMILTALCLTLVVFFLTNLYPNLEKLAKTQGNARMTDDEVVSWLDRNGYG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC
GPLLVRYGEWLGIVPGWTREDPNTGEITGRCIDFGMDPADAPTRCGLLQGDLGFSTVSDE
CCEEEEECCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCH
DVANVLPTRLLLTLKLMGYAFGLMVPAALLVGVLAGMREGSRLDRSLSTVSIASTATPEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCHHH
VSGVIFIVLFASTTAGMSGALTEWGWLGGDGWLGDRRTLFLGSARSAMEDITFWNFTLPV
HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
VTIALYGMGYIARMTRASMAEVMTAQYIRTARLKGVSFRNIVMKHALRNALIAPFTVIML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QFPWLLTGVVIVETLFNYNGFGWTMVQAASNNDIELLLACSIVAVFVVLLTQLISDIGYV
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEE
FLNPRIRIA
EECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]