Click here to switch to the map view.

The map label for this gene is 89054821

Identifier: 89054821

GI number: 89054821

Start: 2336312

End: 2338960

Strand: Reverse

Name: 89054821

Synonym: Jann_2330

Alternate gene names: NA

Gene position: 2338960-2336312 (Counterclockwise)

Preceding gene: 89054822

Following gene: 89054820

Centisome position: 54.17

GC content: 63.27

Gene sequence:

>2649_bases
ATGAGTGATCAAGGTCAGGATCAAACCGGCGGGAAGCGCCAATTCTCCGATGAAGAGCTCCAGGATCTGGTGGCCAGCAC
CGATAGCGGCGCGCGCAATCCCAGCAACCGGTATGTCGCCCTTCTGATCGCGGGCATCGCCCTTGTCTGGTCGCTGTTCC
AACTGTGGATCGCGCAGCCGCAATTGTGGTTTGCCGAATACATCTCTGCGATGAACTCCACCCAGACGCGGCCCCTGCAC
CTGTTCTTCGCCATCGTCCTGGCGTTTCTGGCCTATCCGGCCTTCAAGAATTCCCCGCGCAATTACGTGCCCTGGTACGA
TTGGGTGCTTCTGGCCGTCGGTGCCTTCACCACGTTCTACGTCTTCTGGGCGTCTGACGAGTTGGCGATGACCGCCCGCT
CCGGCCTGCCGACGCAGTTTCAGGTGATCCTGGGTGCTGTCGGCATCGTGTTGCTGCTGGAGGCCAGCCGTCGCGCGCTT
GGCCCGGCACTGACCATCGTCGGCTCCCTGTTCCTTCTCTATGCCTATTTCGGGCAGGGCGCGCTGATCCCGGACCTGAT
CTCCCACGAAGGCCTATCCTTCACGTCCCTCATCAACGCCCAATGGCTGGATACCGGCGGTGTCTTTGGCATTCCGCTGG
GGGTCTCGACGGCGTTCGTCTTCCTCTTCGTCCTCTTCGGCTCGCTGCTGGATAAGGCGGGCGCGGGCAATTACTTCATC
AAGCTGGCCTTCGCGGGTCTGGGGCACCTGCGCGGTGGCCCGGCCAAGGCGGCAGTCGTGGGCTCTGCCATGACCGGCCT
GATCTCCGGCTCCTCCATCGCCAACGTGGTCACCACCGGCACGTTCACCATCCCGCTGATGAAGCGCGTGGGCTTCACCG
CTGAACAAGCGGGCTCGGTGGAGGTCGCCTCCTCCGTCAATGGCCAGATCATGCCGCCCGTCATGGGCGCGGCGGCCTTC
CTGATGGTGGAATTCATCGGCATTTCCTACGTCGAAGTCATCAAACACGCCTTCATCCCGGCGGTCATCTCCTACATCGC
GCTGGTCTATATCGTGCATCTGGAGGCGCTGAAAAAGGACATGCCCGCGTTGGGGCAGGCCAAAAGCTTCTCGGGCATGT
TGATCAAGTTCTTCCTCGGCTTCGTAGTCGCCGGGATCGGCTTCACCGCACTGATCTACGCGGTGGGCTTCCTGCGCGAC
ACCGTGCCCGGCGGCACCGGCCCGATCATGATGGCGCTTCTGGCGGCGGTTTATGTCTGGCTGGTCGCCATCGCGTCCCG
CAAGCCCGACCTGGAAGTCGACGACCCGAATTCCGAAGAGATCAAGCTGCCAGAGGTCAAGGACATCTACGCCACGGGCC
TGCATTACGTGCTGCCCATCGTCGTTCTGGTCTGGTTCCTGATGGTGGAGCGGCAATCGCCCGCCCGCTCGGCCTTCTTC
GCCACCTCCCTGATGATCGGCATCATCGTCACGCAACGCCCCCTGAAAGCGCTGTTCCGGGGAGAGGCCGCGCGCATCGC
CTCTGAATTCAAGGCAGGTCTTGTCGATCTGCGCGAAGGTCTCATCGCGGGCGCGCGCAACATGATCGGCATCGGTGTGG
CCACGGCGGCGGCGGGTATCATCGTGGCCACGGTCACGCGCACGCCCATCGGCACGGAACTTGCGGGGCTGGTTGAACTG
CTCTCCGGCGGCAACCTGTTCCTGATGCTGTGCCTTGTGGGTTTGTTCTCCCTCATCCTCGGGATGGGCCTGCCCACCAC
GGCCAACTACATCGTGGTGTCCTCGCTGATGGCGGGTGTGGTCGTGTCGCTCGGCGCACAGGAAGGCCTGATCGTGCCGC
TGATCGCCGCCCACCTCTTCGTGTTCTATTTCGGGATCATGGCGGATGTGACGCCGCCCGTGGGCCTTGCCAGTTTCGCC
GCGGCGGCGGTGTCCGGCGGCGACCCGATCAAGACCGGCTTCACGGCGTTCTTCTACTCCTTCCGCACCGTGGCCCTGCC
GTTCCTGTTCATCTTCAACCCCACGCTGATCCTTTACGGCGTCGATCTGGGGACCTGGGCGGGCATCGGACAGGCGGTCT
TCGTCTTCATCGTCGCCACCTTTGCCATGCTTTTGTTCGCGGCGGCAACGCAGGGCTATTTCCTCGCGAAATCCCGCATC
TATGAAAGTGCCGCCCTGCTGCTGGTGGCCTTCACGCTCTTCGTGCCGAACGTGTTCCTCAACATGGTCCAGGACCCGTT
CCGCTCCGTCGCCCCGACAGAGTTTGAGACGGTGCTGGCCGAAGTGCCGGAGGGGGAGCAATTGCGCCTTCTGATCGCCG
GGCCGGACTTTGCCAGCGGCGAGACGGCGGAAACCACGCTGGTGGTCACGGCGGAGGGGGCGTCTGCGGCAGAACGCGTG
GCCAATTCCGGCCTGCTCTTGCTGCCCGAGGGCGAGACGATGCGGCTGGACGAGCCGATGTTCGGCACCGATGCCTCCGA
CGCGTTGATCGACTTCGACTTCTATGCCGACGACAATCCGGTGCAGCTCTCGGCCATTCAGGTCGCCCAGGATCGCTGGC
CCGAGCAGATCTTCTACATCCCCGCATTGCTGCTTCTGGGCATCGTGATCCTGCTGCAACGGCGCAGGCAAACCAAACCG
GCCTTCTAG

Upstream 100 bases:

>100_bases
GCCTGATCGAGTGATCGGCCTCTAGACGATCTGGCTGCGGGCGGACCCATCTGCCCGCAGCCCCAAAAAAACGACAAAAA
ACGCGCAAGGGGACGGCCCG

Downstream 100 bases:

>100_bases
ACAGGCCGCCACGCTAACCGGCCTTCCGAGGTCACCCAAAGGGCCCTCCACGGAGACGTCATATGTTCAAAACAATCCTT
CTGCCCGTCGATCTGTCCTC

Product: TRAP transporter, 4TM/12TM fusion protein

Products: NA

Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-Type Transporter Fused Permease Components; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; Inner Membrane Protein; TRAP-Type Transporter Permease Component; C4-Dicarboxylate Anaerobic Carrier; Permease; TRAP-Type Transport System Permease; TRAP Transporter Large Permease; TRAP Transporter 4TM/12TM Fusion Family; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; TRAP Transporter Permease; Integral Membrane Protein; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-Type Transporter; 4TM/12TM TRAP Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component

Number of amino acids: Translated: 882; Mature: 881

Protein sequence:

>882_residues
MSDQGQDQTGGKRQFSDEELQDLVASTDSGARNPSNRYVALLIAGIALVWSLFQLWIAQPQLWFAEYISAMNSTQTRPLH
LFFAIVLAFLAYPAFKNSPRNYVPWYDWVLLAVGAFTTFYVFWASDELAMTARSGLPTQFQVILGAVGIVLLLEASRRAL
GPALTIVGSLFLLYAYFGQGALIPDLISHEGLSFTSLINAQWLDTGGVFGIPLGVSTAFVFLFVLFGSLLDKAGAGNYFI
KLAFAGLGHLRGGPAKAAVVGSAMTGLISGSSIANVVTTGTFTIPLMKRVGFTAEQAGSVEVASSVNGQIMPPVMGAAAF
LMVEFIGISYVEVIKHAFIPAVISYIALVYIVHLEALKKDMPALGQAKSFSGMLIKFFLGFVVAGIGFTALIYAVGFLRD
TVPGGTGPIMMALLAAVYVWLVAIASRKPDLEVDDPNSEEIKLPEVKDIYATGLHYVLPIVVLVWFLMVERQSPARSAFF
ATSLMIGIIVTQRPLKALFRGEAARIASEFKAGLVDLREGLIAGARNMIGIGVATAAAGIIVATVTRTPIGTELAGLVEL
LSGGNLFLMLCLVGLFSLILGMGLPTTANYIVVSSLMAGVVVSLGAQEGLIVPLIAAHLFVFYFGIMADVTPPVGLASFA
AAAVSGGDPIKTGFTAFFYSFRTVALPFLFIFNPTLILYGVDLGTWAGIGQAVFVFIVATFAMLLFAAATQGYFLAKSRI
YESAALLLVAFTLFVPNVFLNMVQDPFRSVAPTEFETVLAEVPEGEQLRLLIAGPDFASGETAETTLVVTAEGASAAERV
ANSGLLLLPEGETMRLDEPMFGTDASDALIDFDFYADDNPVQLSAIQVAQDRWPEQIFYIPALLLLGIVILLQRRRQTKP
AF

Sequences:

>Translated_882_residues
MSDQGQDQTGGKRQFSDEELQDLVASTDSGARNPSNRYVALLIAGIALVWSLFQLWIAQPQLWFAEYISAMNSTQTRPLH
LFFAIVLAFLAYPAFKNSPRNYVPWYDWVLLAVGAFTTFYVFWASDELAMTARSGLPTQFQVILGAVGIVLLLEASRRAL
GPALTIVGSLFLLYAYFGQGALIPDLISHEGLSFTSLINAQWLDTGGVFGIPLGVSTAFVFLFVLFGSLLDKAGAGNYFI
KLAFAGLGHLRGGPAKAAVVGSAMTGLISGSSIANVVTTGTFTIPLMKRVGFTAEQAGSVEVASSVNGQIMPPVMGAAAF
LMVEFIGISYVEVIKHAFIPAVISYIALVYIVHLEALKKDMPALGQAKSFSGMLIKFFLGFVVAGIGFTALIYAVGFLRD
TVPGGTGPIMMALLAAVYVWLVAIASRKPDLEVDDPNSEEIKLPEVKDIYATGLHYVLPIVVLVWFLMVERQSPARSAFF
ATSLMIGIIVTQRPLKALFRGEAARIASEFKAGLVDLREGLIAGARNMIGIGVATAAAGIIVATVTRTPIGTELAGLVEL
LSGGNLFLMLCLVGLFSLILGMGLPTTANYIVVSSLMAGVVVSLGAQEGLIVPLIAAHLFVFYFGIMADVTPPVGLASFA
AAAVSGGDPIKTGFTAFFYSFRTVALPFLFIFNPTLILYGVDLGTWAGIGQAVFVFIVATFAMLLFAAATQGYFLAKSRI
YESAALLLVAFTLFVPNVFLNMVQDPFRSVAPTEFETVLAEVPEGEQLRLLIAGPDFASGETAETTLVVTAEGASAAERV
ANSGLLLLPEGETMRLDEPMFGTDASDALIDFDFYADDNPVQLSAIQVAQDRWPEQIFYIPALLLLGIVILLQRRRQTKP
AF
>Mature_881_residues
SDQGQDQTGGKRQFSDEELQDLVASTDSGARNPSNRYVALLIAGIALVWSLFQLWIAQPQLWFAEYISAMNSTQTRPLHL
FFAIVLAFLAYPAFKNSPRNYVPWYDWVLLAVGAFTTFYVFWASDELAMTARSGLPTQFQVILGAVGIVLLLEASRRALG
PALTIVGSLFLLYAYFGQGALIPDLISHEGLSFTSLINAQWLDTGGVFGIPLGVSTAFVFLFVLFGSLLDKAGAGNYFIK
LAFAGLGHLRGGPAKAAVVGSAMTGLISGSSIANVVTTGTFTIPLMKRVGFTAEQAGSVEVASSVNGQIMPPVMGAAAFL
MVEFIGISYVEVIKHAFIPAVISYIALVYIVHLEALKKDMPALGQAKSFSGMLIKFFLGFVVAGIGFTALIYAVGFLRDT
VPGGTGPIMMALLAAVYVWLVAIASRKPDLEVDDPNSEEIKLPEVKDIYATGLHYVLPIVVLVWFLMVERQSPARSAFFA
TSLMIGIIVTQRPLKALFRGEAARIASEFKAGLVDLREGLIAGARNMIGIGVATAAAGIIVATVTRTPIGTELAGLVELL
SGGNLFLMLCLVGLFSLILGMGLPTTANYIVVSSLMAGVVVSLGAQEGLIVPLIAAHLFVFYFGIMADVTPPVGLASFAA
AAVSGGDPIKTGFTAFFYSFRTVALPFLFIFNPTLILYGVDLGTWAGIGQAVFVFIVATFAMLLFAAATQGYFLAKSRIY
ESAALLLVAFTLFVPNVFLNMVQDPFRSVAPTEFETVLAEVPEGEQLRLLIAGPDFASGETAETTLVVTAEGASAAERVA
NSGLLLLPEGETMRLDEPMFGTDASDALIDFDFYADDNPVQLSAIQVAQDRWPEQIFYIPALLLLGIVILLQRRRQTKPA
F

Specific function: Unknown

COG id: COG4666

COG function: function code R; TRAP-type uncharacterized transport system, fused permease components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94373; Mature: 94241

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQGQDQTGGKRQFSDEELQDLVASTDSGARNPSNRYVALLIAGIALVWSLFQLWIAQP
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
QLWFAEYISAMNSTQTRPLHLFFAIVLAFLAYPAFKNSPRNYVPWYDWVLLAVGAFTTFY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHEE
VFWASDELAMTARSGLPTQFQVILGAVGIVLLLEASRRALGPALTIVGSLFLLYAYFGQG
EEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ALIPDLISHEGLSFTSLINAQWLDTGGVFGIPLGVSTAFVFLFVLFGSLLDKAGAGNYFI
CCCHHHHCCCCCCHHHHHCCCEECCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEE
KLAFAGLGHLRGGPAKAAVVGSAMTGLISGSSIANVVTTGTFTIPLMKRVGFTAEQAGSV
EEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCHHCCCCE
EVASSVNGQIMPPVMGAAAFLMVEFIGISYVEVIKHAFIPAVISYIALVYIVHLEALKKD
EEHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
MPALGQAKSFSGMLIKFFLGFVVAGIGFTALIYAVGFLRDTVPGGTGPIMMALLAAVYVW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LVAIASRKPDLEVDDPNSEEIKLPEVKDIYATGLHYVLPIVVLVWFLMVERQSPARSAFF
HHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ATSLMIGIIVTQRPLKALFRGEAARIASEFKAGLVDLREGLIAGARNMIGIGVATAAAGI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH
IVATVTRTPIGTELAGLVELLSGGNLFLMLCLVGLFSLILGMGLPTTANYIVVSSLMAGV
HEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VVSLGAQEGLIVPLIAAHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPIKTGFTAFFYS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
FRTVALPFLFIFNPTLILYGVDLGTWAGIGQAVFVFIVATFAMLLFAAATQGYFLAKSRI
HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YESAALLLVAFTLFVPNVFLNMVQDPFRSVAPTEFETVLAEVPEGEQLRLLIAGPDFASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCCCC
ETAETTLVVTAEGASAAERVANSGLLLLPEGETMRLDEPMFGTDASDALIDFDFYADDNP
CCCCEEEEEEECCCHHHHHHHCCCEEEEECCCCEECCCCCCCCCCCCCEEEEEEECCCCC
VQLSAIQVAQDRWPEQIFYIPALLLLGIVILLQRRRQTKPAF
EEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDQGQDQTGGKRQFSDEELQDLVASTDSGARNPSNRYVALLIAGIALVWSLFQLWIAQP
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
QLWFAEYISAMNSTQTRPLHLFFAIVLAFLAYPAFKNSPRNYVPWYDWVLLAVGAFTTFY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHEE
VFWASDELAMTARSGLPTQFQVILGAVGIVLLLEASRRALGPALTIVGSLFLLYAYFGQG
EEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ALIPDLISHEGLSFTSLINAQWLDTGGVFGIPLGVSTAFVFLFVLFGSLLDKAGAGNYFI
CCCHHHHCCCCCCHHHHHCCCEECCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEE
KLAFAGLGHLRGGPAKAAVVGSAMTGLISGSSIANVVTTGTFTIPLMKRVGFTAEQAGSV
EEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCHHCCCCE
EVASSVNGQIMPPVMGAAAFLMVEFIGISYVEVIKHAFIPAVISYIALVYIVHLEALKKD
EEHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
MPALGQAKSFSGMLIKFFLGFVVAGIGFTALIYAVGFLRDTVPGGTGPIMMALLAAVYVW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LVAIASRKPDLEVDDPNSEEIKLPEVKDIYATGLHYVLPIVVLVWFLMVERQSPARSAFF
HHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ATSLMIGIIVTQRPLKALFRGEAARIASEFKAGLVDLREGLIAGARNMIGIGVATAAAGI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH
IVATVTRTPIGTELAGLVELLSGGNLFLMLCLVGLFSLILGMGLPTTANYIVVSSLMAGV
HEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VVSLGAQEGLIVPLIAAHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPIKTGFTAFFYS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
FRTVALPFLFIFNPTLILYGVDLGTWAGIGQAVFVFIVATFAMLLFAAATQGYFLAKSRI
HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YESAALLLVAFTLFVPNVFLNMVQDPFRSVAPTEFETVLAEVPEGEQLRLLIAGPDFASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCCCC
ETAETTLVVTAEGASAAERVANSGLLLLPEGETMRLDEPMFGTDASDALIDFDFYADDNP
CCCCEEEEEEECCCHHHHHHHCCCEEEEECCCCEECCCCCCCCCCCCCEEEEEEECCCCC
VQLSAIQVAQDRWPEQIFYIPALLLLGIVILLQRRRQTKPAF
EEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA