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The map label for this gene is yoaB [H]

Identifier: 89054788

GI number: 89054788

Start: 2302848

End: 2303189

Strand: Reverse

Name: yoaB [H]

Synonym: Jann_2297

Alternate gene names: 89054788

Gene position: 2303189-2302848 (Counterclockwise)

Preceding gene: 89054789

Following gene: 89054787

Centisome position: 53.34

GC content: 61.11

Gene sequence:

>342_bases
ATGATTGAACGGATAGACCCGGGCATACGCTCGTCGAAGATCGTGAAACACAATGGCGTGGTCTATCTGACCGGCCAGGT
CGGCGAGGGCGCTGATATCACCGAGCAGACCGTCGAATGCCTGGCCCGTGTCGATGCGCTGCTGGAGCAGGCTGGGTCCT
CACGGGAACATATGTTGCAGGTCACGATCTGGCTGGCTGACATGGCCGACTTCGCCGCGATGAATGAGGTTTGGAACGCC
TGGGTGCCCCAGGGCCATGCACCGGCGCGCGCCTGCGGTGAAGCCAAACTGGCCCGAGATGTTCTGAAAGTGGAAATGAT
CGTCACGGCGGCCGTGGCATGA

Upstream 100 bases:

>100_bases
AGATTGCAGATGCGCAGGCCTACAAGATGCCAGCGGCGATTGATGATCCGGCCATTCTGGATGAGATTGCTGAAGCGCTT
ACCAACAAAGGACTGATCGG

Downstream 100 bases:

>100_bases
CGCGCACTTGGATCACAGCTGCACCGAGCGCGCTTTCACTTGTCGTGCCGATGCTGGCCCATGCACAAGAACAGCTGTTG
GCGCAATACGTCGCCGACAT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MIERIDPGIRSSKIVKHNGVVYLTGQVGEGADITEQTVECLARVDALLEQAGSSREHMLQVTIWLADMADFAAMNEVWNA
WVPQGHAPARACGEAKLARDVLKVEMIVTAAVA

Sequences:

>Translated_113_residues
MIERIDPGIRSSKIVKHNGVVYLTGQVGEGADITEQTVECLARVDALLEQAGSSREHMLQVTIWLADMADFAAMNEVWNA
WVPQGHAPARACGEAKLARDVLKVEMIVTAAVA
>Mature_113_residues
MIERIDPGIRSSKIVKHNGVVYLTGQVGEGADITEQTVECLARVDALLEQAGSSREHMLQVTIWLADMADFAAMNEVWNA
WVPQGHAPARACGEAKLARDVLKVEMIVTAAVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=113, Percent_Identity=49.5575221238938, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12242; Mature: 12242

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERIDPGIRSSKIVKHNGVVYLTGQVGEGADITEQTVECLARVDALLEQAGSSREHMLQ
CCCCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VTIWLADMADFAAMNEVWNAWVPQGHAPARACGEAKLARDVLKVEMIVTAAVA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIERIDPGIRSSKIVKHNGVVYLTGQVGEGADITEQTVECLARVDALLEQAGSSREHMLQ
CCCCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VTIWLADMADFAAMNEVWNAWVPQGHAPARACGEAKLARDVLKVEMIVTAAVA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]