| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is pgpA [H]
Identifier: 89054725
GI number: 89054725
Start: 2238960
End: 2239445
Strand: Reverse
Name: pgpA [H]
Synonym: Jann_2234
Alternate gene names: 89054725
Gene position: 2239445-2238960 (Counterclockwise)
Preceding gene: 89054726
Following gene: 89054724
Centisome position: 51.86
GC content: 67.28
Gene sequence:
>486_bases ATGACCCGTTGGATCACAACGGTCGGTGGCGTGGGCCTGTTGCGTCCGGCCCCCGGAACCTGGGGAAGTGCCGCGGGCCT GGTGGCGGGCGCGCTGATCCACATGGCGGGCAGCTTCTGGCTGCTGTTTGTCGCGACCATAGCCGTCAGCGCGCTGGGGT TCTGGGCCGTCAGGGCAGAGGTCGGCGATAGCGACCAGGACCCGTCCGAGATTGTCATTGACGAGGTCGCAGGCCAATGG GTCGCGCTTTGGCCCGTGTCTTTCGGGGCCTGGATGACCGGCGCGCCGATCACCGCGCTCTATCCCGGGCTGATCGTGGC GTTCCTGGCCTTCCGCGCCTTTGACATTCTAAAACCCGGCCCCGTCGGATGGGCCGACCGGCAGCACGGCGCGTTCGGGA TCATGGCCGATGACCTGATTGCGGGCTGGCTTGCGGCCATGGTCGTGGCCCTGTTCGCCGTCTTCGCGCACGCGGTGCTA ATGTGA
Upstream 100 bases:
>100_bases TGGCCCGCGTCTCCGTCAAGGCCACAACGTCCGAGCGGCTTGGGTTCACCGGCCGGGAGGAAGGGATCGCGGCGCTGGCC ACGATCACGCTGGTGGCCCG
Downstream 100 bases:
>100_bases GTGTTAACACCGTTAACCTATTGAAGGATCGCGGCTGGATGCTCGCCACAGCCGAAAGCTGCACCGGTGGGTTGATCGCA GGCGCAATCACCGATGTGGC
Product: phosphatidylglycerophosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MTRWITTVGGVGLLRPAPGTWGSAAGLVAGALIHMAGSFWLLFVATIAVSALGFWAVRAEVGDSDQDPSEIVIDEVAGQW VALWPVSFGAWMTGAPITALYPGLIVAFLAFRAFDILKPGPVGWADRQHGAFGIMADDLIAGWLAAMVVALFAVFAHAVL M
Sequences:
>Translated_161_residues MTRWITTVGGVGLLRPAPGTWGSAAGLVAGALIHMAGSFWLLFVATIAVSALGFWAVRAEVGDSDQDPSEIVIDEVAGQW VALWPVSFGAWMTGAPITALYPGLIVAFLAFRAFDILKPGPVGWADRQHGAFGIMADDLIAGWLAAMVVALFAVFAHAVL M >Mature_160_residues TRWITTVGGVGLLRPAPGTWGSAAGLVAGALIHMAGSFWLLFVATIAVSALGFWAVRAEVGDSDQDPSEIVIDEVAGQWV ALWPVSFGAWMTGAPITALYPGLIVAFLAFRAFDILKPGPVGWADRQHGAFGIMADDLIAGWLAAMVVALFAVFAHAVLM
Specific function: Specifically hydrolyzes phosphatidylglycerophosphate [H]
COG id: COG1267
COG function: function code I; Phosphatidylglycerophosphatase A and related proteins
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007686 [H]
Pfam domain/function: PF04608 PgpA [H]
EC number: =3.1.3.27 [H]
Molecular weight: Translated: 16909; Mature: 16778
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRWITTVGGVGLLRPAPGTWGSAAGLVAGALIHMAGSFWLLFVATIAVSALGFWAVRAE CCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VGDSDQDPSEIVIDEVAGQWVALWPVSFGAWMTGAPITALYPGLIVAFLAFRAFDILKPG CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC PVGWADRQHGAFGIMADDLIAGWLAAMVVALFAVFAHAVLM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TRWITTVGGVGLLRPAPGTWGSAAGLVAGALIHMAGSFWLLFVATIAVSALGFWAVRAE CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VGDSDQDPSEIVIDEVAGQWVALWPVSFGAWMTGAPITALYPGLIVAFLAFRAFDILKPG CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC PVGWADRQHGAFGIMADDLIAGWLAAMVVALFAVFAHAVLM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]