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The map label for this gene is ureF

Identifier: 89054246

GI number: 89054246

Start: 1743989

End: 1744651

Strand: Direct

Name: ureF

Synonym: Jann_1755

Alternate gene names: 89054246

Gene position: 1743989-1744651 (Clockwise)

Preceding gene: 89054245

Following gene: 89054247

Centisome position: 40.39

GC content: 69.98

Gene sequence:

>663_bases
GTGAGCGACGGGGCGTTTGACGCGGGCCGGACCGGGGGCCTCTTGCGCCTCAGCCAATGGCTGTCGCCTGCGTTTCCCGT
CTCGGCCTACGCCTATTCCCATGGGTTGGAGGCGGAGATCTGCCACGGTCGCGTCCGGGACGGCGCGGACGTTGCGGCCT
GGATCGAGGGCGTGGTGCGGCGCGGTGCCGGGCGCACGGATGCGATCGTGATGCTGTCTGCGATGCAGGCGGGTGCGGAT
CTGGACAGGCTGCATGATCTGGCGCGCGCCCTCGCGGGGTCCCGTGAGCGCTGGGAAGAAACCCGCGACCAGGGGGCCGC
GCTGGCCGCGACCCTGGCGGCCATGGGAGAGGGCGACGGCGTTGCGCGCGCTTATCCGGTGGCACTGGGGGCGGCCGCCG
CGCGTCTGGATCTGGCGGCGGATGTGGTTGCCGCGCTTTATTTACAGAGCGTAGTGGGGAATCTGGTCTCTGCCGCCGTG
CGGTTTGTGCCATTGGGCCAGGCCGAGGGGCAACGGATCGTGGCGGGGATGCAGGGTGCCGTGGCCGACGTGGCGGCGGA
GGTGGTGAATTGCAGCATAGACGACATCGCGCAGGCCGCGTTCGGGGCCGATCTGGCCGCGATGGAGCATGAGGGGCTGG
AAGTGCGCATCTTTCGGACCTGA

Upstream 100 bases:

>100_bases
AAGGCGGGGCGTATGGCCACGGTCGAACCCATGGCCATTCCCACGGGCCGGGCGAGCATGCGCACGGGCATGATCATGGA
CACGACCACGGGCATGATCC

Downstream 100 bases:

>100_bases
GCACGGGCGGGTGCCGTTGGAGTGAGTTGTATTTGCCCAGATGAAAGGGGAGCGTGGGCGCGAGGATCGCCCGAAGCGCC
TTCCCGGCGGGCGGAGTTGG

Product: urease accessory protein UreF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSDGAFDAGRTGGLLRLSQWLSPAFPVSAYAYSHGLEAEICHGRVRDGADVAAWIEGVVRRGAGRTDAIVMLSAMQAGAD
LDRLHDLARALAGSRERWEETRDQGAALAATLAAMGEGDGVARAYPVALGAAAARLDLAADVVAALYLQSVVGNLVSAAV
RFVPLGQAEGQRIVAGMQGAVADVAAEVVNCSIDDIAQAAFGADLAAMEHEGLEVRIFRT

Sequences:

>Translated_220_residues
MSDGAFDAGRTGGLLRLSQWLSPAFPVSAYAYSHGLEAEICHGRVRDGADVAAWIEGVVRRGAGRTDAIVMLSAMQAGAD
LDRLHDLARALAGSRERWEETRDQGAALAATLAAMGEGDGVARAYPVALGAAAARLDLAADVVAALYLQSVVGNLVSAAV
RFVPLGQAEGQRIVAGMQGAVADVAAEVVNCSIDDIAQAAFGADLAAMEHEGLEVRIFRT
>Mature_219_residues
SDGAFDAGRTGGLLRLSQWLSPAFPVSAYAYSHGLEAEICHGRVRDGADVAAWIEGVVRRGAGRTDAIVMLSAMQAGADL
DRLHDLARALAGSRERWEETRDQGAALAATLAAMGEGDGVARAYPVALGAAAARLDLAADVVAALYLQSVVGNLVSAAVR
FVPLGQAEGQRIVAGMQGAVADVAAEVVNCSIDDIAQAAFGADLAAMEHEGLEVRIFRT

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0830

COG function: function code O; Urease accessory protein UreF

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UREF_JANSC (Q28RJ0)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_509697.1
- STRING:   Q28RJ0
- GeneID:   3934203
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_1755
- eggNOG:   COG0830
- HOGENOM:   HBG709295
- OMA:   WLSPAFP
- BioCyc:   JSP290400:JANN_1755-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01385
- InterPro:   IPR002639
- PIRSF:   PIRSF009467

Pfam domain/function: PF01730 UreF

EC number: NA

Molecular weight: Translated: 22759; Mature: 22628

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGAFDAGRTGGLLRLSQWLSPAFPVSAYAYSHGLEAEICHGRVRDGADVAAWIEGVVR
CCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHH
RGAGRTDAIVMLSAMQAGADLDRLHDLARALAGSRERWEETRDQGAALAATLAAMGEGDG
HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
VARAYPVALGAAAARLDLAADVVAALYLQSVVGNLVSAAVRFVPLGQAEGQRIVAGMQGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
VADVAAEVVNCSIDDIAQAAFGADLAAMEHEGLEVRIFRT
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCEEEEEEC
>Mature Secondary Structure 
SDGAFDAGRTGGLLRLSQWLSPAFPVSAYAYSHGLEAEICHGRVRDGADVAAWIEGVVR
CCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHH
RGAGRTDAIVMLSAMQAGADLDRLHDLARALAGSRERWEETRDQGAALAATLAAMGEGDG
HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
VARAYPVALGAAAARLDLAADVVAALYLQSVVGNLVSAAVRFVPLGQAEGQRIVAGMQGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
VADVAAEVVNCSIDDIAQAAFGADLAAMEHEGLEVRIFRT
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA