Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 89053847

GI number: 89053847

Start: 1320088

End: 1321344

Strand: Reverse

Name: ycjN [C]

Synonym: Jann_1356

Alternate gene names: 89053847

Gene position: 1321344-1320088 (Counterclockwise)

Preceding gene: 89053848

Following gene: 89053846

Centisome position: 30.6

GC content: 62.13

Gene sequence:

>1257_bases
ATGTCCATGAAGAAACTTACCGCCAGCCTGCTGGCCACAACCATGCTGGTCGGCACCGCCGCATCTGCGCAGGATGTGAC
GCTGACGATCGAAAGCTGGCGCAACGACGACCTGACGCTTTGGCAGGACGTCATTATCCCGGCGTTTGAAGCCGAAAACC
CCGGCATCTCGGTTCAGTTCACGCCGTCTGCGCCTGCGGAATACAACGCCGTCCTGAACTCGAAGCTGGACGCAGGCTCC
GCCGGTGACCTGATCACCTGCCGTCCGTTTGATGCGTCCCTCGCGCTCTATGAGGCGGGTCACCTGACCGACCTCAGCGA
TCTGGACGCGATGGCCAACTTCTCGGACGTGGCGCAATCCGCATGGCAGACCGATGATGGCGCGGCGACCTTCTGCATGC
CGATGGCCTCCGTGATCCACGGCTTCATCTACAACGCCGACGCCTTCGCGGAGCTTGGCTTGGAAGAGCCCACGAACGTT
GACGAATTCTTCGCCGTGCTCGACGCGATTGAGGAGGACGGCAATTACATCCCGATGGCCATGGGCACCGCCGACCAGTG
GGAAGCGGCCACCATGGGCTACAACAATATCGGGCCAAACTACTGGCGCGGCGAAGAAGGTCGCCTCGCCTTGATTGCCG
GTGAACAATCACTCACGGATCCCGAATGGGTCGGACCGCTGGAACAGCTTGCACGTTGGGGCGATTACCTCGGCCGCGGC
TATGAGGCACAGACCTATCCGGATAGCCAAAACCTGTTCACCTTGGGGCGCGCCGCGATTTATCCGGCAGGCAGCTGGGA
AATCACCGGCTTCAACGCGCAGGCCGACTTTGCTATGGGTGCCTTCGCCCCGCCGGTGCCGAACGCGGGCGATGAGTGTT
TCATCTCGGATCACACCGATATCGCCATCGGTCTGAACGCCGCCTCCCCCAATGCCGAAGCCGCACGCACCTTCCTCAAT
TGGGTTGGTTCGGCTGAGTTTGCCTCCATCTACGCCAACGCGCTGCCGGGCTTCTTCCCGCTGTCAAACGCCGAGGTTGA
ACTGGAAGATCCGCTGGCGCAGGAAATGATTTCCTGGCGAGGGGAGTGTGAAAGCTCGATCCGGTCCACCTACCAGATCC
TGTCGCGCGGCACGCCGAACCTGGAAAACGAGACGTGGAACGCCTCCACCCAGGTGATCCGTGGCGCAGAAGCCCCCGCC
GACGCCGCCGCGCGTCTGCAGGAAGGCCTCGCCTCCTGGTACGAACCGCAGCAGTAA

Upstream 100 bases:

>100_bases
CCTTTCGCGGACCGATGGTATTCTCCGCCCTGCTTTGGCGGAACTTATGGGTCGTCGCTGATGAACGACCGGGATCAAAG
GACTTAAGGGAGGAAACCAA

Downstream 100 bases:

>100_bases
CCTCCCAGTTTGCTGCATTTGATCCGGGCGGCAGGTCTCGCCCGGATCACCCCAACCCTCACCCGATTTTAAAGGAGGCT
GTCATGCGCCAATCGCGTAT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: Sugar ABC Transporter Periplasmic Protein; Sugar ABC Transporter; Sugar ABC Transporter Periplasmic Component; ABC Transporter

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MSMKKLTASLLATTMLVGTAASAQDVTLTIESWRNDDLTLWQDVIIPAFEAENPGISVQFTPSAPAEYNAVLNSKLDAGS
AGDLITCRPFDASLALYEAGHLTDLSDLDAMANFSDVAQSAWQTDDGAATFCMPMASVIHGFIYNADAFAELGLEEPTNV
DEFFAVLDAIEEDGNYIPMAMGTADQWEAATMGYNNIGPNYWRGEEGRLALIAGEQSLTDPEWVGPLEQLARWGDYLGRG
YEAQTYPDSQNLFTLGRAAIYPAGSWEITGFNAQADFAMGAFAPPVPNAGDECFISDHTDIAIGLNAASPNAEAARTFLN
WVGSAEFASIYANALPGFFPLSNAEVELEDPLAQEMISWRGECESSIRSTYQILSRGTPNLENETWNASTQVIRGAEAPA
DAAARLQEGLASWYEPQQ

Sequences:

>Translated_418_residues
MSMKKLTASLLATTMLVGTAASAQDVTLTIESWRNDDLTLWQDVIIPAFEAENPGISVQFTPSAPAEYNAVLNSKLDAGS
AGDLITCRPFDASLALYEAGHLTDLSDLDAMANFSDVAQSAWQTDDGAATFCMPMASVIHGFIYNADAFAELGLEEPTNV
DEFFAVLDAIEEDGNYIPMAMGTADQWEAATMGYNNIGPNYWRGEEGRLALIAGEQSLTDPEWVGPLEQLARWGDYLGRG
YEAQTYPDSQNLFTLGRAAIYPAGSWEITGFNAQADFAMGAFAPPVPNAGDECFISDHTDIAIGLNAASPNAEAARTFLN
WVGSAEFASIYANALPGFFPLSNAEVELEDPLAQEMISWRGECESSIRSTYQILSRGTPNLENETWNASTQVIRGAEAPA
DAAARLQEGLASWYEPQQ
>Mature_417_residues
SMKKLTASLLATTMLVGTAASAQDVTLTIESWRNDDLTLWQDVIIPAFEAENPGISVQFTPSAPAEYNAVLNSKLDAGSA
GDLITCRPFDASLALYEAGHLTDLSDLDAMANFSDVAQSAWQTDDGAATFCMPMASVIHGFIYNADAFAELGLEEPTNVD
EFFAVLDAIEEDGNYIPMAMGTADQWEAATMGYNNIGPNYWRGEEGRLALIAGEQSLTDPEWVGPLEQLARWGDYLGRGY
EAQTYPDSQNLFTLGRAAIYPAGSWEITGFNAQADFAMGAFAPPVPNAGDECFISDHTDIAIGLNAASPNAEAARTFLNW
VGSAEFASIYANALPGFFPLSNAEVELEDPLAQEMISWRGECESSIRSTYQILSRGTPNLENETWNASTQVIRGAEAPAD
AAARLQEGLASWYEPQQ

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45117; Mature: 44986

Theoretical pI: Translated: 3.69; Mature: 3.69

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKKLTASLLATTMLVGTAASAQDVTLTIESWRNDDLTLWQDVIIPAFEAENPGISVQF
CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHEEEEECCCCCEEEEE
TPSAPAEYNAVLNSKLDAGSAGDLITCRPFDASLALYEAGHLTDLSDLDAMANFSDVAQS
CCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
AWQTDDGAATFCMPMASVIHGFIYNADAFAELGLEEPTNVDEFFAVLDAIEEDGNYIPMA
HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
MGTADQWEAATMGYNNIGPNYWRGEEGRLALIAGEQSLTDPEWVGPLEQLARWGDYLGRG
CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHCCC
YEAQTYPDSQNLFTLGRAAIYPAGSWEITGFNAQADFAMGAFAPPVPNAGDECFISDHTD
CCCCCCCCCCCEEEECCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCE
IAIGLNAASPNAEAARTFLNWVGSAEFASIYANALPGFFPLSNAEVELEDPLAQEMISWR
EEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHH
GECESSIRSTYQILSRGTPNLENETWNASTQVIRGAEAPADAAARLQEGLASWYEPQQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SMKKLTASLLATTMLVGTAASAQDVTLTIESWRNDDLTLWQDVIIPAFEAENPGISVQF
CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHEEEEECCCCCEEEEE
TPSAPAEYNAVLNSKLDAGSAGDLITCRPFDASLALYEAGHLTDLSDLDAMANFSDVAQS
CCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
AWQTDDGAATFCMPMASVIHGFIYNADAFAELGLEEPTNVDEFFAVLDAIEEDGNYIPMA
HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
MGTADQWEAATMGYNNIGPNYWRGEEGRLALIAGEQSLTDPEWVGPLEQLARWGDYLGRG
CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHCCC
YEAQTYPDSQNLFTLGRAAIYPAGSWEITGFNAQADFAMGAFAPPVPNAGDECFISDHTD
CCCCCCCCCCCEEEECCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCE
IAIGLNAASPNAEAARTFLNWVGSAEFASIYANALPGFFPLSNAEVELEDPLAQEMISWR
EEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHH
GECESSIRSTYQILSRGTPNLENETWNASTQVIRGAEAPADAAARLQEGLASWYEPQQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA