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The map label for this gene is ycjO [H]

Identifier: 89053775

GI number: 89053775

Start: 1245059

End: 1246303

Strand: Direct

Name: ycjO [H]

Synonym: Jann_1284

Alternate gene names: 89053775

Gene position: 1245059-1246303 (Clockwise)

Preceding gene: 89053774

Following gene: 89053776

Centisome position: 28.83

GC content: 54.86

Gene sequence:

>1245_bases
ATGGCGGACGTTCATCCACCATCTGGCACCGGCCCACTTGCCAAGCGTGAAGCGCGTCTGGCCTGGGGATTACTGCTTCC
GACGATAACGGCAGTCGCCATTGTGGTGGTCTTGCCGCTTCTCGCGATCTTTTGGATTTCCTTCAAACCTGTGTCGCTGT
CAGATTTGCGAGCGCCCGAAGCGGTTGTCCGTGAGGATTTTCGCGGCGGCCCGGAGATCGCCGGCGATGAAGCAACGATC
CGCTACCGGTTGCGCAATTCCTCGCAGGACAGACCTATACTTAACGTTTCGTTCATCGATACGTTGCCAGAGGGTCTGAG
CGCGCAATCGCTGGACGAGCGATGTGTCCTGGACGGCCGAAACCTATCCTGTGTCTTTGGTGACTGGGAACCGGGGTTCC
GTGACACGCTGACCATTCCGGTCGTGGTGGCGCAGGCTTATTTCGATAACGATGAGCGCCCGCGCGACAGTGATGCCCAG
ATTGTTGGGCAATCCTCCAATGTGCTCACCAACGACGAATTCACGCTGCAGAACTTCGCGCGAATTTTCAACGGAGATGA
GTTTTTTGAGGTTCTGTGGGTCACGCTGTTCTACACCGTTTTCGGCACAATAGGCGCGCTCCTGGTTGGTCTGTTTGCGG
CGCTGTTGCTGAACAAATCGTTCAAAGGCCAGGGCATCCTCCGCGGACTTTACCTGTTTCCATACGTGGCACCGGTGATT
GCCGTGGCCTTTGCCTGGTTGATCCTGTTCGATCCTTTTTCCGGCTCGGTCAATGCGCTGCTGGTGCAAATGGGTGTGTC
CACAGAGGCCATAAACTTCTTTGGAGAGCGCCCCTTGGCGCTGATCATGGTGACGATATTTGAGATCTGGCGCTATTTCC
CTTTGTCGTTTCTGTTCATCCTAGCGCGGATGCAAAGTATCGATACGGATATGTACGAAGCCGCTGACATGGACGGCGCG
TCGCCGTTTCAGCAATTTTGGTATCTCAGTGTGCCACAATTGCTTGGCATACTCAGTGTTTTGTTCCTGCTCCGCTTCAT
TTGGACGTTCAACAAATTCGATGACATCTTTCTTCTGACGGGCGGCAATGCGGGCACCCGGACCCTGACGGTGAATGTCT
ATGAACAGGCATTCGCGATTTCCAATATCGGTGCGGGCGCGGCTGTTGCCGTTGTGATCTTCGGATGCCTGCTGATGTTC
TCGATCGTCTTCCTCAAATACATCAGCCGGGAGGAGGGTTTATGA

Upstream 100 bases:

>100_bases
CGGCGGTTGAATAATCTAACATCCGGTGGAGCGCTTATGTCTGCGCGCTCCACCACCCCAAATCTTTCATTCGCACTAAT
GTTCGGGAGCTCTGAAAGCT

Downstream 100 bases:

>100_bases
GCATGATCCGACGAGGGTTCGTGACAGGCCCTGTACTGGGCGCGCTGTGGATGGTTGTTCTATCGGTTACGGTGGCGGTC
GCGATGTCCTTCGCAACAGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MADVHPPSGTGPLAKREARLAWGLLLPTITAVAIVVVLPLLAIFWISFKPVSLSDLRAPEAVVREDFRGGPEIAGDEATI
RYRLRNSSQDRPILNVSFIDTLPEGLSAQSLDERCVLDGRNLSCVFGDWEPGFRDTLTIPVVVAQAYFDNDERPRDSDAQ
IVGQSSNVLTNDEFTLQNFARIFNGDEFFEVLWVTLFYTVFGTIGALLVGLFAALLLNKSFKGQGILRGLYLFPYVAPVI
AVAFAWLILFDPFSGSVNALLVQMGVSTEAINFFGERPLALIMVTIFEIWRYFPLSFLFILARMQSIDTDMYEAADMDGA
SPFQQFWYLSVPQLLGILSVLFLLRFIWTFNKFDDIFLLTGGNAGTRTLTVNVYEQAFAISNIGAGAAVAVVIFGCLLMF
SIVFLKYISREEGL

Sequences:

>Translated_414_residues
MADVHPPSGTGPLAKREARLAWGLLLPTITAVAIVVVLPLLAIFWISFKPVSLSDLRAPEAVVREDFRGGPEIAGDEATI
RYRLRNSSQDRPILNVSFIDTLPEGLSAQSLDERCVLDGRNLSCVFGDWEPGFRDTLTIPVVVAQAYFDNDERPRDSDAQ
IVGQSSNVLTNDEFTLQNFARIFNGDEFFEVLWVTLFYTVFGTIGALLVGLFAALLLNKSFKGQGILRGLYLFPYVAPVI
AVAFAWLILFDPFSGSVNALLVQMGVSTEAINFFGERPLALIMVTIFEIWRYFPLSFLFILARMQSIDTDMYEAADMDGA
SPFQQFWYLSVPQLLGILSVLFLLRFIWTFNKFDDIFLLTGGNAGTRTLTVNVYEQAFAISNIGAGAAVAVVIFGCLLMF
SIVFLKYISREEGL
>Mature_413_residues
ADVHPPSGTGPLAKREARLAWGLLLPTITAVAIVVVLPLLAIFWISFKPVSLSDLRAPEAVVREDFRGGPEIAGDEATIR
YRLRNSSQDRPILNVSFIDTLPEGLSAQSLDERCVLDGRNLSCVFGDWEPGFRDTLTIPVVVAQAYFDNDERPRDSDAQI
VGQSSNVLTNDEFTLQNFARIFNGDEFFEVLWVTLFYTVFGTIGALLVGLFAALLLNKSFKGQGILRGLYLFPYVAPVIA
VAFAWLILFDPFSGSVNALLVQMGVSTEAINFFGERPLALIMVTIFEIWRYFPLSFLFILARMQSIDTDMYEAADMDGAS
PFQQFWYLSVPQLLGILSVLFLLRFIWTFNKFDDIFLLTGGNAGTRTLTVNVYEQAFAISNIGAGAAVAVVIFGCLLMFS
IVFLKYISREEGL

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=231, Percent_Identity=35.4978354978355, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1789861, Length=241, Percent_Identity=26.5560165975104, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1790465, Length=252, Percent_Identity=30.952380952381, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 45978; Mature: 45847

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVHPPSGTGPLAKREARLAWGLLLPTITAVAIVVVLPLLAIFWISFKPVSLSDLRAPE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCH
AVVREDFRGGPEIAGDEATIRYRLRNSSQDRPILNVSFIDTLPEGLSAQSLDERCVLDGR
HHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEHHHHHCCCCCCHHCCCCHHEECCC
NLSCVFGDWEPGFRDTLTIPVVVAQAYFDNDERPRDSDAQIVGQSSNVLTNDEFTLQNFA
CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEECCCHHHHHHH
RIFNGDEFFEVLWVTLFYTVFGTIGALLVGLFAALLLNKSFKGQGILRGLYLFPYVAPVI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AVAFAWLILFDPFSGSVNALLVQMGVSTEAINFFGERPLALIMVTIFEIWRYFPLSFLFI
HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LARMQSIDTDMYEAADMDGASPFQQFWYLSVPQLLGILSVLFLLRFIWTFNKFDDIFLLT
HHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
GGNAGTRTLTVNVYEQAFAISNIGAGAAVAVVIFGCLLMFSIVFLKYISREEGL
CCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADVHPPSGTGPLAKREARLAWGLLLPTITAVAIVVVLPLLAIFWISFKPVSLSDLRAPE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCH
AVVREDFRGGPEIAGDEATIRYRLRNSSQDRPILNVSFIDTLPEGLSAQSLDERCVLDGR
HHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEHHHHHCCCCCCHHCCCCHHEECCC
NLSCVFGDWEPGFRDTLTIPVVVAQAYFDNDERPRDSDAQIVGQSSNVLTNDEFTLQNFA
CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCEEECCCHHHHHHH
RIFNGDEFFEVLWVTLFYTVFGTIGALLVGLFAALLLNKSFKGQGILRGLYLFPYVAPVI
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AVAFAWLILFDPFSGSVNALLVQMGVSTEAINFFGERPLALIMVTIFEIWRYFPLSFLFI
HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LARMQSIDTDMYEAADMDGASPFQQFWYLSVPQLLGILSVLFLLRFIWTFNKFDDIFLLT
HHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
GGNAGTRTLTVNVYEQAFAISNIGAGAAVAVVIFGCLLMFSIVFLKYISREEGL
CCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]