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The map label for this gene is bcd [H]

Identifier: 89053755

GI number: 89053755

Start: 1224047

End: 1225243

Strand: Reverse

Name: bcd [H]

Synonym: Jann_1264

Alternate gene names: 89053755

Gene position: 1225243-1224047 (Counterclockwise)

Preceding gene: 89053764

Following gene: 89053750

Centisome position: 28.38

GC content: 65.33

Gene sequence:

>1197_bases
ATGACCCATCCTCTCGTCGCCGTCGCCAAAGACCTCGCCCCCACATTCGCGGAGCGGGCCGCCCACTGGGACCGCAGCCG
GGATTATTGCTGGAGCAACGTTCAGGAACTGGCCGACGCTGGCATCATGGGCATGACGATCCCCAAGGCGCTCGGCGGCC
AGGGCGCAAGTTTTCTGGATGTGGTGGAGGTCGTTGAAGAGCTGGCGAAGGCCTGCACGTTGACCGCCCGCGTGGTGGTG
GAGGCCAATATGGGCGGCATCAGTGCCGTCATGGCCTATGGCACCGATGAGCAGAAAGCCTTCTGTGCCCCCATCGTTCT
GGCGGGCGACAAACCCGCGATTTGCATCACCGAGCCGGAGGCGGGCTCCGCCGCGACCCAGATGCGCACCACCGCCTGCA
AGCGCGGCGACACGTATATCCTGAACGGGTCCAAGCATTGGATCACCGGCGGCGGTGTCTCAAAGCTGCATCTGGTCTTC
GCGCAGGTGCTCAATGAGGCCGGACAGCCCCAGGGCATCGGCGGTTTCATCGTTTATGCCGATCCAAAGGCTCCGCCCGC
GGGCTTCCGCGTCCTGGGCCGGGAGCACACGATGGGCCTGTGCGGTATGCCGGAGGCCGAGCTGAAATTCGATAACTTGG
AGGTCGACGCAAAATGGCTGCTGACGCCACCGTCCGGGCTGCGGCGCGGCTTCGCGGATCTGATGACCGCCTATAATTCA
CAGCGTGTGGGCGCGGGCACCATTGCCCTGGGCGTGGCCGCAGGCGCGTTGGACCACGCGAAACGCTACATGACGGAGCG
GCAGCAATTTGGCCGCCCGATTGCCGAGTTCCAGGGCCTGCAATGGATGGTCGCCGATATGGACACACAGGTCCATGCCG
CCCGGCTGATGTTGCACGACGCCGCCCGCTGCGAGGGGGCCTTCCCCGACATGACCAAGGCCGCGCGGGCGAAGCTGTTT
GCGTCCGAGATGGGGATCAAAGTCGTCAATGACGCCCTGCAAATGTTCGGCGCGCGCGGCTACAGCGACCGCGAACCGCT
GGAACGGATGTACCGCGACGTGCGCATGTTCACCATCGGCGGCGGCACGGCCCAGATCTTGCGGACGCAGATCGCCGGGT
CCGCCCTTGGGATCAAGGTGCCGCAAACCCGCGATGGCTATGCCGCGCCAGTGCCGATGCAGATCGCGGCGGAATAG

Upstream 100 bases:

>100_bases
CGCTGAACTTAATATCAAATCTTATTCCATGGTAATGAAGTGCCGCGTCTGTATGGTCAAGTCATCACGACCCTGTGACC
ACCACCGGAGCCTGCCCACT

Downstream 100 bases:

>100_bases
TTTCAGGTCAGACGATCAATAAAGACGTGGTTGGCAATCCAGCGATCCCGGATCTGACCGCGCCAGGCGGATCGCAGCTC
AGCCTCCGGCAGGCCCGCCC

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTHPLVAVAKDLAPTFAERAAHWDRSRDYCWSNVQELADAGIMGMTIPKALGGQGASFLDVVEVVEELAKACTLTARVVV
EANMGGISAVMAYGTDEQKAFCAPIVLAGDKPAICITEPEAGSAATQMRTTACKRGDTYILNGSKHWITGGGVSKLHLVF
AQVLNEAGQPQGIGGFIVYADPKAPPAGFRVLGREHTMGLCGMPEAELKFDNLEVDAKWLLTPPSGLRRGFADLMTAYNS
QRVGAGTIALGVAAGALDHAKRYMTERQQFGRPIAEFQGLQWMVADMDTQVHAARLMLHDAARCEGAFPDMTKAARAKLF
ASEMGIKVVNDALQMFGARGYSDREPLERMYRDVRMFTIGGGTAQILRTQIAGSALGIKVPQTRDGYAAPVPMQIAAE

Sequences:

>Translated_398_residues
MTHPLVAVAKDLAPTFAERAAHWDRSRDYCWSNVQELADAGIMGMTIPKALGGQGASFLDVVEVVEELAKACTLTARVVV
EANMGGISAVMAYGTDEQKAFCAPIVLAGDKPAICITEPEAGSAATQMRTTACKRGDTYILNGSKHWITGGGVSKLHLVF
AQVLNEAGQPQGIGGFIVYADPKAPPAGFRVLGREHTMGLCGMPEAELKFDNLEVDAKWLLTPPSGLRRGFADLMTAYNS
QRVGAGTIALGVAAGALDHAKRYMTERQQFGRPIAEFQGLQWMVADMDTQVHAARLMLHDAARCEGAFPDMTKAARAKLF
ASEMGIKVVNDALQMFGARGYSDREPLERMYRDVRMFTIGGGTAQILRTQIAGSALGIKVPQTRDGYAAPVPMQIAAE
>Mature_397_residues
THPLVAVAKDLAPTFAERAAHWDRSRDYCWSNVQELADAGIMGMTIPKALGGQGASFLDVVEVVEELAKACTLTARVVVE
ANMGGISAVMAYGTDEQKAFCAPIVLAGDKPAICITEPEAGSAATQMRTTACKRGDTYILNGSKHWITGGGVSKLHLVFA
QVLNEAGQPQGIGGFIVYADPKAPPAGFRVLGREHTMGLCGMPEAELKFDNLEVDAKWLLTPPSGLRRGFADLMTAYNSQ
RVGAGTIALGVAAGALDHAKRYMTERQQFGRPIAEFQGLQWMVADMDTQVHAARLMLHDAARCEGAFPDMTKAARAKLFA
SEMGIKVVNDALQMFGARGYSDREPLERMYRDVRMFTIGGGTAQILRTQIAGSALGIKVPQTRDGYAAPVPMQIAAE

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=342, Percent_Identity=35.0877192982456, Blast_Score=179, Evalue=3e-45,
Organism=Homo sapiens, GI4557233, Length=369, Percent_Identity=33.3333333333333, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI4557231, Length=357, Percent_Identity=31.3725490196078, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI187960098, Length=357, Percent_Identity=31.3725490196078, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI226958412, Length=371, Percent_Identity=30.7277628032345, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI7656849, Length=371, Percent_Identity=31.5363881401617, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI226958414, Length=351, Percent_Identity=30.1994301994302, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI21361497, Length=352, Percent_Identity=31.25, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI4501857, Length=361, Percent_Identity=30.1939058171745, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI4557235, Length=368, Percent_Identity=32.0652173913043, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI76496475, Length=368, Percent_Identity=32.0652173913043, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI48976061, Length=308, Percent_Identity=24.3506493506494, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI211971008, Length=308, Percent_Identity=24.3506493506494, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4503943, Length=352, Percent_Identity=26.7045454545455, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI7669494, Length=318, Percent_Identity=27.0440251572327, Blast_Score=76, Evalue=7e-14,
Organism=Escherichia coli, GI87081958, Length=358, Percent_Identity=28.4916201117318, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1786223, Length=348, Percent_Identity=28.448275862069, Blast_Score=116, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17506239, Length=339, Percent_Identity=32.4483775811209, Blast_Score=182, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17508101, Length=335, Percent_Identity=32.8358208955224, Blast_Score=181, Evalue=7e-46,
Organism=Caenorhabditis elegans, GI17534899, Length=359, Percent_Identity=33.1476323119777, Blast_Score=177, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI17569725, Length=367, Percent_Identity=32.6975476839237, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI71990804, Length=300, Percent_Identity=33.6666666666667, Blast_Score=160, Evalue=9e-40,
Organism=Caenorhabditis elegans, GI17538396, Length=372, Percent_Identity=31.989247311828, Blast_Score=159, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17570075, Length=371, Percent_Identity=30.188679245283, Blast_Score=159, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17533517, Length=371, Percent_Identity=30.188679245283, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71985184, Length=358, Percent_Identity=29.8882681564246, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI32563615, Length=247, Percent_Identity=29.9595141700405, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17551932, Length=374, Percent_Identity=26.2032085561497, Blast_Score=114, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17505929, Length=353, Percent_Identity=25.4957507082153, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71985192, Length=283, Percent_Identity=28.6219081272085, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71982178, Length=240, Percent_Identity=29.5833333333333, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17534353, Length=208, Percent_Identity=33.1730769230769, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17562446, Length=312, Percent_Identity=25.3205128205128, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17531909, Length=247, Percent_Identity=29.5546558704453, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21356377, Length=379, Percent_Identity=32.4538258575198, Blast_Score=176, Evalue=3e-44,
Organism=Drosophila melanogaster, GI24666513, Length=350, Percent_Identity=34, Blast_Score=169, Evalue=3e-42,
Organism=Drosophila melanogaster, GI24660351, Length=356, Percent_Identity=30.6179775280899, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI21355753, Length=368, Percent_Identity=32.8804347826087, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24646207, Length=368, Percent_Identity=31.25, Blast_Score=149, Evalue=3e-36,
Organism=Drosophila melanogaster, GI281363737, Length=354, Percent_Identity=30.225988700565, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19920834, Length=347, Percent_Identity=27.9538904899135, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 42680; Mature: 42548

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPLVAVAKDLAPTFAERAAHWDRSRDYCWSNVQELADAGIMGMTIPKALGGQGASFLD
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCCHHHH
VVEVVEELAKACTLTARVVVEANMGGISAVMAYGTDEQKAFCAPIVLAGDKPAICITEPE
HHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCC
AGSAATQMRTTACKRGDTYILNGSKHWITGGGVSKLHLVFAQVLNEAGQPQGIGGFIVYA
CCCHHHHHHHHHHCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
DPKAPPAGFRVLGREHTMGLCGMPEAELKFDNLEVDAKWLLTPPSGLRRGFADLMTAYNS
CCCCCCCCCEEECCCCCCCCCCCCCCCEEECCEEECEEEEECCCHHHHHHHHHHHHHHCC
QRVGAGTIALGVAAGALDHAKRYMTERQQFGRPIAEFQGLQWMVADMDTQVHAARLMLHD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHH
AARCEGAFPDMTKAARAKLFASEMGIKVVNDALQMFGARGYSDREPLERMYRDVRMFTIG
HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEEC
GGTAQILRTQIAGSALGIKVPQTRDGYAAPVPMQIAAE
CCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCC
>Mature Secondary Structure 
THPLVAVAKDLAPTFAERAAHWDRSRDYCWSNVQELADAGIMGMTIPKALGGQGASFLD
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCCHHHH
VVEVVEELAKACTLTARVVVEANMGGISAVMAYGTDEQKAFCAPIVLAGDKPAICITEPE
HHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCC
AGSAATQMRTTACKRGDTYILNGSKHWITGGGVSKLHLVFAQVLNEAGQPQGIGGFIVYA
CCCHHHHHHHHHHCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
DPKAPPAGFRVLGREHTMGLCGMPEAELKFDNLEVDAKWLLTPPSGLRRGFADLMTAYNS
CCCCCCCCCEEECCCCCCCCCCCCCCCEEECCEEECEEEEECCCHHHHHHHHHHHHHHCC
QRVGAGTIALGVAAGALDHAKRYMTERQQFGRPIAEFQGLQWMVADMDTQVHAARLMLHD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHH
AARCEGAFPDMTKAARAKLFASEMGIKVVNDALQMFGARGYSDREPLERMYRDVRMFTIG
HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEEC
GGTAQILRTQIAGSALGIKVPQTRDGYAAPVPMQIAAE
CCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]