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The map label for this gene is ydaM [H]

Identifier: 89053736

GI number: 89053736

Start: 1199558

End: 1201522

Strand: Reverse

Name: ydaM [H]

Synonym: Jann_1245

Alternate gene names: 89053736

Gene position: 1201522-1199558 (Counterclockwise)

Preceding gene: 161898396

Following gene: 89053734

Centisome position: 27.83

GC content: 65.9

Gene sequence:

>1965_bases
GTGGACGGGGATCTCCCCCAGGCTACTCGACCGAAATCGACCCGAAGTCCTGGCCCGGTGGGGTCAGCAGGGGGCGCCGC
AAGCGCCCTCCTCAGTGCTGTCATCCCCAGCCCCGAGCGCTCAGAGCCCGCCGGTGTGCGGGAGTTGCTGCTCGCGCGCG
GCCTGGTCACTCCCGATCAGATGCGGGCTGCACAAGACGCATCGCGGGGCACCAGCCTGTCCCTGGGCGAGATCCTGATC
GCGCAGGGAGCGATCAGCGAGCCGGAGCTTCTGTCGACGCTGGCCCAGACCTATGGCGTCGGGATCGCGGATCTGTCCGG
GGATTTGCCCGATACATCCCTTGCGCCCTTGTTGCCCGCTGCCGCCTCGATCACCGCCGAGGCGGTGATCTGGAAGCGCG
CCGGATCCGCCCTTGTCATCGCAACGTCCCGGCCAGATCGCATTCAGGACCTTCGCGCCCTTCTGCCCGGCGGCCAACGT
ATCATGACCGTTCTGGCCTCTCGCAACCAGATCACGGAGGCGCAGCGCAAGCTCTACGGTCCCCACCTCGCCCGCAAGGC
GGAGGGGCGCGCGCCCGAGCGTCATTCCTGCCGCAGCTGGCACGGACGGACGATGGCACATGGCATCCTCGCAGGGGTTG
CCGTGGCGGTGGCCGGGCTGCTTCTGGTGCCGATTTTACTGGCGCAGGTGGTCTTCGGCGTCGCGGTTGTCGTCTTCATC
GCCAATTGCGTCCTGAAATTTGCGGCCTTCGGGCGGACCCTGCGCGGTGCGGCCTCCCCCTCCGCCACACCGGAGACGAG
CGCGCAGTTTCTGCACAACCCCACCGTGTCGATCCTTGTGCCGCTGTTCCGCGAACCAGAAGTCGCCGGCGCGCTGGTGG
AGCGTCTGCGCCGCCTCGACTATCCCAGAGAGCGGCTCGATATCATTTTGGCCGTGGAAGAGGACGACCCCCTGACGCTC
TCGGCCCTGCAAACCGGCACCCTGCCCGCCTGGATGCGCGCCATTGTCGTCCCGCGCGGCAGCCCGCAGACAAAGCCGCG
GGCCCTGAACTACGTCCTGAACTACGCGCGCGGTGATATCGTCGGCATCTATGATGCGGAGGATCGCCCCGAACCCGACC
AGATTCAGCGCGTCGTGCAACGCTTTGCCGAGGTCCCGGCAGATGTCGCCTGCCTGCAAGGCCGCCTCGACTATTACAAT
GCCCGCCACAATTGGCTGAGCCGCCTGTTCACCGTGGAATATGCCGCCTGGTTCCGCGTGCTTTTGCCGGGCGTGCAACG
CTTGGGCCTTGTCGTCCCGCTGGGGGGCACCACCGTCTTCCTGCGCCGCAATGTGCTGGAAGGCGTCGGCGCCTGGGACG
CCCATAACGTCACCGAGGATGCGGAACTTGGCCTGCGTCTGGCGCGCGCGGGCTACCAGACTGAAATTGTCGAGACGACC
ACATTTGAAGAGGCCAACGCCGCAACGCTGCCCTGGATCAAGCAACGCTCGCGCTGGCTGAAGGGCTACCTGATGACCTG
GGGGGCTGCCATGCGCCGCCCGCGCGCGCTGCTGAATGAGCTTGGGCCGTGGCGGTTTGCCTGGCTCCAGATTCAGTTCG
CCGGCGCGGTTCTGGGCTTCCTGACGGCGCCGCTGCTGTGGAGTTTCATGCTGAAACCCTTCGGCGTCTGGCATCCGATG
GACGGCGTGATGTCTCCGTTTGCGTATGGTGTGCTGGGCGTCGTGATGGTCAGCGGTTTGATCGGGTCTGTCGCGATATC
ATTCTACGCCTGCCGCGCGAAGCACCTGCGCCACCTGCGCCCAATCGCGCCGCTGGTCGAACCCTACTACCTGTTCGGCA
CCATCGCAGCCTGGATTGGCCTGTTTGAGCTGATCGCAAAGCCGTTTTTCTGGGCAAAAACCACCCATGGAAAGTTTGGC
GCGACCCAGCACGGCGCAGACGACATCCGCGACGCCGAGGAGTAA

Upstream 100 bases:

>100_bases
CATTCGATCGCATTATTTGCTTTCGGTTTACGAATTCTTAACCAATTCCACAGGACAAACGGGTTGGCGTAACAGGCGCC
AGCATTAAGGAATTTGGAAC

Downstream 100 bases:

>100_bases
CGCCGCCCGGTGCTAGCCCCGCTGCGCTTCTTCCCGCAGGCGGACCTTGAACGCCGTTGACAGATGCGCCTTGAGCGCGT
CGGCCGCGCGGTCCCCATCG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 654; Mature: 654

Protein sequence:

>654_residues
MDGDLPQATRPKSTRSPGPVGSAGGAASALLSAVIPSPERSEPAGVRELLLARGLVTPDQMRAAQDASRGTSLSLGEILI
AQGAISEPELLSTLAQTYGVGIADLSGDLPDTSLAPLLPAAASITAEAVIWKRAGSALVIATSRPDRIQDLRALLPGGQR
IMTVLASRNQITEAQRKLYGPHLARKAEGRAPERHSCRSWHGRTMAHGILAGVAVAVAGLLLVPILLAQVVFGVAVVVFI
ANCVLKFAAFGRTLRGAASPSATPETSAQFLHNPTVSILVPLFREPEVAGALVERLRRLDYPRERLDIILAVEEDDPLTL
SALQTGTLPAWMRAIVVPRGSPQTKPRALNYVLNYARGDIVGIYDAEDRPEPDQIQRVVQRFAEVPADVACLQGRLDYYN
ARHNWLSRLFTVEYAAWFRVLLPGVQRLGLVVPLGGTTVFLRRNVLEGVGAWDAHNVTEDAELGLRLARAGYQTEIVETT
TFEEANAATLPWIKQRSRWLKGYLMTWGAAMRRPRALLNELGPWRFAWLQIQFAGAVLGFLTAPLLWSFMLKPFGVWHPM
DGVMSPFAYGVLGVVMVSGLIGSVAISFYACRAKHLRHLRPIAPLVEPYYLFGTIAAWIGLFELIAKPFFWAKTTHGKFG
ATQHGADDIRDAEE

Sequences:

>Translated_654_residues
MDGDLPQATRPKSTRSPGPVGSAGGAASALLSAVIPSPERSEPAGVRELLLARGLVTPDQMRAAQDASRGTSLSLGEILI
AQGAISEPELLSTLAQTYGVGIADLSGDLPDTSLAPLLPAAASITAEAVIWKRAGSALVIATSRPDRIQDLRALLPGGQR
IMTVLASRNQITEAQRKLYGPHLARKAEGRAPERHSCRSWHGRTMAHGILAGVAVAVAGLLLVPILLAQVVFGVAVVVFI
ANCVLKFAAFGRTLRGAASPSATPETSAQFLHNPTVSILVPLFREPEVAGALVERLRRLDYPRERLDIILAVEEDDPLTL
SALQTGTLPAWMRAIVVPRGSPQTKPRALNYVLNYARGDIVGIYDAEDRPEPDQIQRVVQRFAEVPADVACLQGRLDYYN
ARHNWLSRLFTVEYAAWFRVLLPGVQRLGLVVPLGGTTVFLRRNVLEGVGAWDAHNVTEDAELGLRLARAGYQTEIVETT
TFEEANAATLPWIKQRSRWLKGYLMTWGAAMRRPRALLNELGPWRFAWLQIQFAGAVLGFLTAPLLWSFMLKPFGVWHPM
DGVMSPFAYGVLGVVMVSGLIGSVAISFYACRAKHLRHLRPIAPLVEPYYLFGTIAAWIGLFELIAKPFFWAKTTHGKFG
ATQHGADDIRDAEE
>Mature_654_residues
MDGDLPQATRPKSTRSPGPVGSAGGAASALLSAVIPSPERSEPAGVRELLLARGLVTPDQMRAAQDASRGTSLSLGEILI
AQGAISEPELLSTLAQTYGVGIADLSGDLPDTSLAPLLPAAASITAEAVIWKRAGSALVIATSRPDRIQDLRALLPGGQR
IMTVLASRNQITEAQRKLYGPHLARKAEGRAPERHSCRSWHGRTMAHGILAGVAVAVAGLLLVPILLAQVVFGVAVVVFI
ANCVLKFAAFGRTLRGAASPSATPETSAQFLHNPTVSILVPLFREPEVAGALVERLRRLDYPRERLDIILAVEEDDPLTL
SALQTGTLPAWMRAIVVPRGSPQTKPRALNYVLNYARGDIVGIYDAEDRPEPDQIQRVVQRFAEVPADVACLQGRLDYYN
ARHNWLSRLFTVEYAAWFRVLLPGVQRLGLVVPLGGTTVFLRRNVLEGVGAWDAHNVTEDAELGLRLARAGYQTEIVETT
TFEEANAATLPWIKQRSRWLKGYLMTWGAAMRRPRALLNELGPWRFAWLQIQFAGAVLGFLTAPLLWSFMLKPFGVWHPM
DGVMSPFAYGVLGVVMVSGLIGSVAISFYACRAKHLRHLRPIAPLVEPYYLFGTIAAWIGLFELIAKPFFWAKTTHGKFG
ATQHGADDIRDAEE

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 71096; Mature: 71096

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGDLPQATRPKSTRSPGPVGSAGGAASALLSAVIPSPERSEPAGVRELLLARGLVTPDQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHH
MRAAQDASRGTSLSLGEILIAQGAISEPELLSTLAQTYGVGIADLSGDLPDTSLAPLLPA
HHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHH
AASITAEAVIWKRAGSALVIATSRPDRIQDLRALLPGGQRIMTVLASRNQITEAQRKLYG
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
PHLARKAEGRAPERHSCRSWHGRTMAHGILAGVAVAVAGLLLVPILLAQVVFGVAVVVFI
HHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANCVLKFAAFGRTLRGAASPSATPETSAQFLHNPTVSILVPLFREPEVAGALVERLRRLD
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCC
YPRERLDIILAVEEDDPLTLSALQTGTLPAWMRAIVVPRGSPQTKPRALNYVLNYARGDI
CCHHHEEEEEEEECCCCEEEEHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCE
VGIYDAEDRPEPDQIQRVVQRFAEVPADVACLQGRLDYYNARHNWLSRLFTVEYAAWFRV
EEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPGVQRLGLVVPLGGTTVFLRRNVLEGVGAWDAHNVTEDAELGLRLARAGYQTEIVETT
HHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHEEEEC
TFEEANAATLPWIKQRSRWLKGYLMTWGAAMRRPRALLNELGPWRFAWLQIQFAGAVLGF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEEEEEHHHHHHHHH
LTAPLLWSFMLKPFGVWHPMDGVMSPFAYGVLGVVMVSGLIGSVAISFYACRAKHLRHLR
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PIAPLVEPYYLFGTIAAWIGLFELIAKPFFWAKTTHGKFGATQHGADDIRDAEE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MDGDLPQATRPKSTRSPGPVGSAGGAASALLSAVIPSPERSEPAGVRELLLARGLVTPDQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHH
MRAAQDASRGTSLSLGEILIAQGAISEPELLSTLAQTYGVGIADLSGDLPDTSLAPLLPA
HHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHH
AASITAEAVIWKRAGSALVIATSRPDRIQDLRALLPGGQRIMTVLASRNQITEAQRKLYG
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
PHLARKAEGRAPERHSCRSWHGRTMAHGILAGVAVAVAGLLLVPILLAQVVFGVAVVVFI
HHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANCVLKFAAFGRTLRGAASPSATPETSAQFLHNPTVSILVPLFREPEVAGALVERLRRLD
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCC
YPRERLDIILAVEEDDPLTLSALQTGTLPAWMRAIVVPRGSPQTKPRALNYVLNYARGDI
CCHHHEEEEEEEECCCCEEEEHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCE
VGIYDAEDRPEPDQIQRVVQRFAEVPADVACLQGRLDYYNARHNWLSRLFTVEYAAWFRV
EEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPGVQRLGLVVPLGGTTVFLRRNVLEGVGAWDAHNVTEDAELGLRLARAGYQTEIVETT
HHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHEEEEC
TFEEANAATLPWIKQRSRWLKGYLMTWGAAMRRPRALLNELGPWRFAWLQIQFAGAVLGF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEEEEEHHHHHHHHH
LTAPLLWSFMLKPFGVWHPMDGVMSPFAYGVLGVVMVSGLIGSVAISFYACRAKHLRHLR
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PIAPLVEPYYLFGTIAAWIGLFELIAKPFFWAKTTHGKFGATQHGADDIRDAEE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]