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The map label for this gene is pecT [H]

Identifier: 89053721

GI number: 89053721

Start: 1186389

End: 1187243

Strand: Direct

Name: pecT [H]

Synonym: Jann_1230

Alternate gene names: 89053721

Gene position: 1186389-1187243 (Clockwise)

Preceding gene: 89053714

Following gene: 89053723

Centisome position: 27.48

GC content: 62.92

Gene sequence:

>855_bases
ATGGCGCGAAACCTTGATCTCACCTCGCTCAGGGCCTTTGTAACGGTCGTTGACGCGGGCGGTGTCACGAAAGCTTCGGG
CTTTTTGAACCTGACGCAATCGGCGGTCTCCATGCAGCTTAAACGGCTGGAAGAGGCGTTGGACGTGTCGCTGTTTGACC
GCACCACGCGCAAGCTGAACCTGACGGGCGCGGGCGAACAGATGTTGGGCTATGCACGCCGGATGCTGGAGCTGAATGAT
GAGGTTCTGGGCCGCCTGACCGCCACCGAATATGAGGGGGAGATCGTTCTGGGTGTGCCCGCTGACGTCGTCTACCCGGC
CATCCCGGAGGTTCTGCAACGCTTCAACACGGCCTACCCGCGCATGAAGGTCCATCTTCTGTCCCTCGGCACGCTCAGCC
TGAAAGCAGCGTTCGAGCGGGGCGAGGCGGACGTGATCCTGACCACGGAAGAGGATGTGGACCGGGGCGGAGAGACGCTG
TTGGAGCGTCCCATGGTCTGGATCGGAGCAGAAGAGGGGCAGATGTGGAAGCAGCGCCCCCTTCGGCTGGCGTTCGAACA
CGATTGCATCTTTCGCGGCCCGGCGCTCACGGCGCTCGATGCGGCAGGTATATCCTGGGAGATGGCGGTGGACTCCGATT
CGATGCGCACCATCGAGGTCTCCGTCAGTGCCGACCTAGCGGTTCATGCGGTCATCGAGGGGACGGAATCAGCCTATACG
TCGATCGTGCCCCACGGCGGCGCGCTGCCCGTGCTGCCCCGCATCCGCATCAACATGTACCGCTCAGACCTGTCCCGGGC
CGAGCCTGTAGATGCCCTTGTCGATCTGATCCGCCAGGCCTACCGCTCCATCTAG

Upstream 100 bases:

>100_bases
ACGAAGTAGGTCTTCATCATTCCGATACGTGATGTATGGACGGGTTCGTCACATTTTGATAGTGAATGTTTTTGAAGAAT
ATCATCACGGGATTTGATGG

Downstream 100 bases:

>100_bases
ACCTATCGCTGCACCTAGATCGTCACGACGACCTTCCCCGCGACTTTGCGGGAGCGCAGCAACTCCAGCGCGTCGCCCGC
CTCCGCCAAGGGCCGCGTCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MARNLDLTSLRAFVTVVDAGGVTKASGFLNLTQSAVSMQLKRLEEALDVSLFDRTTRKLNLTGAGEQMLGYARRMLELND
EVLGRLTATEYEGEIVLGVPADVVYPAIPEVLQRFNTAYPRMKVHLLSLGTLSLKAAFERGEADVILTTEEDVDRGGETL
LERPMVWIGAEEGQMWKQRPLRLAFEHDCIFRGPALTALDAAGISWEMAVDSDSMRTIEVSVSADLAVHAVIEGTESAYT
SIVPHGGALPVLPRIRINMYRSDLSRAEPVDALVDLIRQAYRSI

Sequences:

>Translated_284_residues
MARNLDLTSLRAFVTVVDAGGVTKASGFLNLTQSAVSMQLKRLEEALDVSLFDRTTRKLNLTGAGEQMLGYARRMLELND
EVLGRLTATEYEGEIVLGVPADVVYPAIPEVLQRFNTAYPRMKVHLLSLGTLSLKAAFERGEADVILTTEEDVDRGGETL
LERPMVWIGAEEGQMWKQRPLRLAFEHDCIFRGPALTALDAAGISWEMAVDSDSMRTIEVSVSADLAVHAVIEGTESAYT
SIVPHGGALPVLPRIRINMYRSDLSRAEPVDALVDLIRQAYRSI
>Mature_283_residues
ARNLDLTSLRAFVTVVDAGGVTKASGFLNLTQSAVSMQLKRLEEALDVSLFDRTTRKLNLTGAGEQMLGYARRMLELNDE
VLGRLTATEYEGEIVLGVPADVVYPAIPEVLQRFNTAYPRMKVHLLSLGTLSLKAAFERGEADVILTTEEDVDRGGETLL
ERPMVWIGAEEGQMWKQRPLRLAFEHDCIFRGPALTALDAAGISWEMAVDSDSMRTIEVSVSADLAVHAVIEGTESAYTS
IVPHGGALPVLPRIRINMYRSDLSRAEPVDALVDLIRQAYRSI

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=228, Percent_Identity=32.0175438596491, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI145693105, Length=141, Percent_Identity=34.0425531914894, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787601, Length=171, Percent_Identity=30.4093567251462, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787806, Length=122, Percent_Identity=33.6065573770492, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082132, Length=234, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=128, Percent_Identity=32.8125, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788887, Length=143, Percent_Identity=32.8671328671329, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31247; Mature: 31116

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNLDLTSLRAFVTVVDAGGVTKASGFLNLTQSAVSMQLKRLEEALDVSLFDRTTRKLN
CCCCCCHHHHEEEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LTGAGEQMLGYARRMLELNDEVLGRLTATEYEGEIVLGVPADVVYPAIPEVLQRFNTAYP
ECCCCHHHHHHHHHHHHCCHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCC
RMKVHLLSLGTLSLKAAFERGEADVILTTEEDVDRGGETLLERPMVWIGAEEGQMWKQRP
CEEEEEEEECHHHHHHHHCCCCCCEEEEEHHHHCCCCHHHHHCCEEEEECCCCCHHHHCC
LRLAFEHDCIFRGPALTALDAAGISWEMAVDSDSMRTIEVSVSADLAVHAVIEGTESAYT
CEEEECCCEEECCCCCCEECCCCCEEEEEECCCCCEEEEEEEECCEEEEEEECCCHHHHH
SIVPHGGALPVLPRIRINMYRSDLSRAEPVDALVDLIRQAYRSI
EECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARNLDLTSLRAFVTVVDAGGVTKASGFLNLTQSAVSMQLKRLEEALDVSLFDRTTRKLN
CCCCCHHHHEEEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LTGAGEQMLGYARRMLELNDEVLGRLTATEYEGEIVLGVPADVVYPAIPEVLQRFNTAYP
ECCCCHHHHHHHHHHHHCCHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCC
RMKVHLLSLGTLSLKAAFERGEADVILTTEEDVDRGGETLLERPMVWIGAEEGQMWKQRP
CEEEEEEEECHHHHHHHHCCCCCCEEEEEHHHHCCCCHHHHHCCEEEEECCCCCHHHHCC
LRLAFEHDCIFRGPALTALDAAGISWEMAVDSDSMRTIEVSVSADLAVHAVIEGTESAYT
CEEEECCCEEECCCCCCEECCCCCEEEEEECCCCCEEEEEEEECCEEEEEEECCCHHHHH
SIVPHGGALPVLPRIRINMYRSDLSRAEPVDALVDLIRQAYRSI
EECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]