Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89053697

Identifier: 89053697

GI number: 89053697

Start: 1166578

End: 1167576

Strand: Reverse

Name: 89053697

Synonym: Jann_1206

Alternate gene names: NA

Gene position: 1167576-1166578 (Counterclockwise)

Preceding gene: 89053704

Following gene: 89053695

Centisome position: 27.04

GC content: 64.96

Gene sequence:

>999_bases
GTGTCAGCCCACCCGCCTCTTTTCCGGTTTCAAACCTACCCCGCGCGTGCTCTGCGGGTGGTCTCGGGCGCAAATATCGG
GGACGGGATCGGGCTGGAGACTGACGCGCTGCCGGGCGACATTTACCGCCTCGCATCGGGCCATGGGGCAGAGCGGCTGG
CCATCTCCGACGCCGGAGAGGGCGGACGCCCCTGCGTGGCCGACGGATCAGACATCGGCACGCCGGGAGAGGCGCTGACG
ATTTCCGCCTGCCACATGTTGATGGGTCCGTCGGGTAACGTGGCGGAGGTCCTGATCCTGACCCACACCACCGAGGGCGG
AGATCAGTTGTATGTCCTGCCCCTCTCGACCCTGAAGATCGACGCGGAATATGAATTGATCGGCTCCGAGATTGCCAGTG
CGCCCGAACGTTTTGCCGATATCGCCAGTGTCAGCTTTCTGGCGGGGACGCATCTGACGCTTGCCAACGGCAAACAGATC
CCGGTGGAGCATGTGCAGATCGGTGATCTTCTGCTGACCCGCGAAAATGGGCCGCAGCCGGTGCGCTGGATCGGCTTTCA
GACCCGCCGCGCCGTGGGCAACGCCGCACCCGTGCGGATCAAGGCGGGCACGCTCAACACCTCTCGCGACCTGCGCCTGT
CGCCGCAGCATCGCCTGTTCATCTGGCAGCGCCGCGACGAATTGGGCACCGGACGGGCCGAGGTGATGGTGAAGGCCGAG
CTATTGGTAAACGGCGACACCGTCCTGCGCGAAGAGGGTGGCCATGTGGACAGCTTTCAGATCGTCTTCAACAGCCACGA
AATCATCTACGCCGAGGGGATCGCCGTCGAAAGCCTTCTGGTGACGGGGCAGACCCGCGCACGTCTGCCCAAAGATCTGG
CGCTGACCGTCTCCGACACTGCCGCGGCCAGTGCCGCCGCACTGGAATTGGGCGATGACGCGGGCGCAGATATGGTGGAG
CGTTTGTCGCGCGCCTCCAAGGGCGTGGGTCGGGGCTAG

Upstream 100 bases:

>100_bases
TTGAAATCTGCCTACCAGCCCCCCTGCTCCGCCACCAGCCTTGACCGCCCTGCCCCGCGCCTGTCTAACCGGGAAATCCC
CTGCAAAGGACCGCGAAAAC

Downstream 100 bases:

>100_bases
GCGGCTGCGTCAGCCGGTGCCGAAGAACTCTTCCCGTACGATTTTACCGTCCGCGACGGTGTAAATCGCCACCTCCGTCA
TATCCATCCGCTCGCCGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSAHPPLFRFQTYPARALRVVSGANIGDGIGLETDALPGDIYRLASGHGAERLAISDAGEGGRPCVADGSDIGTPGEALT
ISACHMLMGPSGNVAEVLILTHTTEGGDQLYVLPLSTLKIDAEYELIGSEIASAPERFADIASVSFLAGTHLTLANGKQI
PVEHVQIGDLLLTRENGPQPVRWIGFQTRRAVGNAAPVRIKAGTLNTSRDLRLSPQHRLFIWQRRDELGTGRAEVMVKAE
LLVNGDTVLREEGGHVDSFQIVFNSHEIIYAEGIAVESLLVTGQTRARLPKDLALTVSDTAAASAAALELGDDAGADMVE
RLSRASKGVGRG

Sequences:

>Translated_332_residues
MSAHPPLFRFQTYPARALRVVSGANIGDGIGLETDALPGDIYRLASGHGAERLAISDAGEGGRPCVADGSDIGTPGEALT
ISACHMLMGPSGNVAEVLILTHTTEGGDQLYVLPLSTLKIDAEYELIGSEIASAPERFADIASVSFLAGTHLTLANGKQI
PVEHVQIGDLLLTRENGPQPVRWIGFQTRRAVGNAAPVRIKAGTLNTSRDLRLSPQHRLFIWQRRDELGTGRAEVMVKAE
LLVNGDTVLREEGGHVDSFQIVFNSHEIIYAEGIAVESLLVTGQTRARLPKDLALTVSDTAAASAAALELGDDAGADMVE
RLSRASKGVGRG
>Mature_331_residues
SAHPPLFRFQTYPARALRVVSGANIGDGIGLETDALPGDIYRLASGHGAERLAISDAGEGGRPCVADGSDIGTPGEALTI
SACHMLMGPSGNVAEVLILTHTTEGGDQLYVLPLSTLKIDAEYELIGSEIASAPERFADIASVSFLAGTHLTLANGKQIP
VEHVQIGDLLLTRENGPQPVRWIGFQTRRAVGNAAPVRIKAGTLNTSRDLRLSPQHRLFIWQRRDELGTGRAEVMVKAEL
LVNGDTVLREEGGHVDSFQIVFNSHEIIYAEGIAVESLLVTGQTRARLPKDLALTVSDTAAASAAALELGDDAGADMVER
LSRASKGVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35140; Mature: 35009

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHPPLFRFQTYPARALRVVSGANIGDGIGLETDALPGDIYRLASGHGAERLAISDAGE
CCCCCCCEEEECCCHHHEEEECCCCCCCCCCCCCCCCCCHHHEECCCCCCEEEEEECCCC
GGRPCVADGSDIGTPGEALTISACHMLMGPSGNVAEVLILTHTTEGGDQLYVLPLSTLKI
CCCCEEECCCCCCCCCCEEEEEEEHEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEEEE
DAEYELIGSEIASAPERFADIASVSFLAGTHLTLANGKQIPVEHVQIGDLLLTRENGPQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHEEEECEEEEECCCCCCC
VRWIGFQTRRAVGNAAPVRIKAGTLNTSRDLRLSPQHRLFIWQRRDELGTGRAEVMVKAE
EEEECCCHHHHCCCCCCEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCCCEEEEEEEE
LLVNGDTVLREEGGHVDSFQIVFNSHEIIYAEGIAVESLLVTGQTRARLPKDLALTVSDT
EEECCCEEEECCCCCEEEEEEEEECCEEEEECCCEEEEEEEECCHHHCCCCCEEEEEECC
AAASAAALELGDDAGADMVERLSRASKGVGRG
CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAHPPLFRFQTYPARALRVVSGANIGDGIGLETDALPGDIYRLASGHGAERLAISDAGE
CCCCCCEEEECCCHHHEEEECCCCCCCCCCCCCCCCCCHHHEECCCCCCEEEEEECCCC
GGRPCVADGSDIGTPGEALTISACHMLMGPSGNVAEVLILTHTTEGGDQLYVLPLSTLKI
CCCCEEECCCCCCCCCCEEEEEEEHEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEEEE
DAEYELIGSEIASAPERFADIASVSFLAGTHLTLANGKQIPVEHVQIGDLLLTRENGPQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHEEEECEEEEECCCCCCC
VRWIGFQTRRAVGNAAPVRIKAGTLNTSRDLRLSPQHRLFIWQRRDELGTGRAEVMVKAE
EEEECCCHHHHCCCCCCEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCCCEEEEEEEE
LLVNGDTVLREEGGHVDSFQIVFNSHEIIYAEGIAVESLLVTGQTRARLPKDLALTVSDT
EEECCCEEEECCCCCEEEEEEEEECCEEEEECCCEEEEEEEECCHHHCCCCCEEEEEECC
AAASAAALELGDDAGADMVERLSRASKGVGRG
CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA