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The map label for this gene is 89053690

Identifier: 89053690

GI number: 89053690

Start: 1159114

End: 1160790

Strand: Direct

Name: 89053690

Synonym: Jann_1199

Alternate gene names: NA

Gene position: 1159114-1160790 (Clockwise)

Preceding gene: 89053689

Following gene: 89053696

Centisome position: 26.84

GC content: 62.19

Gene sequence:

>1677_bases
ATGAGTGACCGCAATCGCCTCATCTATCTCCCCATCGGCGGCGCGGGGGAGATTGGGATGAACTGCTATGTCTATGGCTA
CGGGCCAGAAGGGCAGGAGCGGTTGATCGTGGTCGACACGGGCGTGGCGTTTCCCGATATGGACGGCCAGCCGGGCGTGG
ATCTGATCCTGCCCGATGTCGACTGGCTGGAGGATCGCAAGGGCCGGATTGAAGCGATTTTCATCACCCACGCCCACGAG
GATCATGTGGGTGCGGTCGGCCATCTGTGGGGCCGTCTGGAAGCGCCGGTGTACTGCCGCAAGTTCACCGCCATCCACGC
GATGCGCAAGATGGATGAGGCGGGACATGACGCGGCGCAGGTCCGTGTGGTGGAGGCCTATCCCGATGTGGTGGAGGCCG
GGCCGTTCAAAGTCTCCTTCGCGCCGGTCTCCCATTCCATCCCCGAGGCATCTGGCCTTGTGATCGACAGTGACGCAGGC
CGCGTGATCCACTCGGGCGACTACAAGATCGACCGCTCCCCCGTCGTGGGGGAGGCGTTTGATGAGGATATGTGGCGCGA
AATCGCGTCCGACGGCGTCCTGGCCTATGTCTGCGATTCGACTAACGTTTTCTCGCGCCACCCGGGCCGGTCGGAATCCG
AGCTGCCGCCGCAGATTACGGAGCTTGTGGCGAAGGCCAAGGGTATGGTCGTGGCCACCACCTTCGCGTCCAACATCGCG
CGGTTGCAGACGCTGGCGGATGCAGGCATTGCGGCGGGTCGTTCGATCTGCCTGATGGGCCGTGCGATGCAACGGATGGT
GAAAGCGGGGCGTGAGGCGGGTGTCTTGACCAACTTCCCCACAACCGTGTCACCGGAAGACGCCCTTGATATCCCTCGCG
AAAGCCTGATGCTGATTGTGACGGGCAGTCAGGGAGAGCGGCGCGCCGCCTCTGCCTCCCTGTCCCGCGGCAAGTATCTG
GGTCATGAATTGAAGGAGGGCGATACGTTCCTCTTCTCCTCCAAGACCATCCCCGGAAACGAAGTGCCGGTCGCCTATAT
CCAGAACTCGCTTGCCGAGATCGGAGTAGAGATCGTTGATGACACGTCCGGCTTCTACCACGTTTCGGGCCATGCCAATC
GCCCGGATATCGAGGTGATGCATGAGGTGCTAAAGCCGCAGATCGTGGTGCCGTGCCATGGTGAATATCGCCACCTGCGG
GAGCACTCCCGCCTTGCGATGGGCAAGGGCATGGCCGGGATCGTGGCGGCCAACGGGATGATGGTGGAGCTGTCGGGCAA
CGCCCCCGGCGTGACTGAGCATATCGAGGTTGGGCGCACGTATCTGGATGGCGACGCCTTCGTCGGCCAGTATGACGGCG
TGATCCGTGAGCGGATGAAGATGGCCCTGAACGGCATGGTTGTCGTGGCGCTGATTGTGGACGAATCCGATGAGGTTCTC
GAAGACGCCTGGGTGCAGTTGAAGGGCTTGCCAGAGGTCGGGTCCTCTGGCGTATCGTTGCAGGAGTTGGTTGAGGACGA
CATCGCCCGCCTGTTGCCGCGCCTGGATGCCAAGATCATCGACGATGACGACAAGCTGGAAGAGGCGGTCAAGCGCGTGG
CGCGCAAAGTGTGCTTGCAAGAGATTGGCAAAAAGCCCGAGGTCACGCTGCTGGTCAGCCGCCTGATGGCGGAGTAA

Upstream 100 bases:

>100_bases
TGTTTGCGCAGGGAGAGGTGTTATTTGACACCGTCGAAGACGATCTGACGATGTACGGACTGACCGTCATCCATAAATAC
AACAAGGATAAAAACCCCTC

Downstream 100 bases:

>100_bases
ATATTTGAGCTGAAACGAAAAAGCGCCGCGCAGGGTGTGATCCTTGCGCGGCGCTTTTTTGTCTTGCGGAGGCTTAGTCG
GCGGAGGGCGCGTCTGCCGT

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 558; Mature: 557

Protein sequence:

>558_residues
MSDRNRLIYLPIGGAGEIGMNCYVYGYGPEGQERLIVVDTGVAFPDMDGQPGVDLILPDVDWLEDRKGRIEAIFITHAHE
DHVGAVGHLWGRLEAPVYCRKFTAIHAMRKMDEAGHDAAQVRVVEAYPDVVEAGPFKVSFAPVSHSIPEASGLVIDSDAG
RVIHSGDYKIDRSPVVGEAFDEDMWREIASDGVLAYVCDSTNVFSRHPGRSESELPPQITELVAKAKGMVVATTFASNIA
RLQTLADAGIAAGRSICLMGRAMQRMVKAGREAGVLTNFPTTVSPEDALDIPRESLMLIVTGSQGERRAASASLSRGKYL
GHELKEGDTFLFSSKTIPGNEVPVAYIQNSLAEIGVEIVDDTSGFYHVSGHANRPDIEVMHEVLKPQIVVPCHGEYRHLR
EHSRLAMGKGMAGIVAANGMMVELSGNAPGVTEHIEVGRTYLDGDAFVGQYDGVIRERMKMALNGMVVVALIVDESDEVL
EDAWVQLKGLPEVGSSGVSLQELVEDDIARLLPRLDAKIIDDDDKLEEAVKRVARKVCLQEIGKKPEVTLLVSRLMAE

Sequences:

>Translated_558_residues
MSDRNRLIYLPIGGAGEIGMNCYVYGYGPEGQERLIVVDTGVAFPDMDGQPGVDLILPDVDWLEDRKGRIEAIFITHAHE
DHVGAVGHLWGRLEAPVYCRKFTAIHAMRKMDEAGHDAAQVRVVEAYPDVVEAGPFKVSFAPVSHSIPEASGLVIDSDAG
RVIHSGDYKIDRSPVVGEAFDEDMWREIASDGVLAYVCDSTNVFSRHPGRSESELPPQITELVAKAKGMVVATTFASNIA
RLQTLADAGIAAGRSICLMGRAMQRMVKAGREAGVLTNFPTTVSPEDALDIPRESLMLIVTGSQGERRAASASLSRGKYL
GHELKEGDTFLFSSKTIPGNEVPVAYIQNSLAEIGVEIVDDTSGFYHVSGHANRPDIEVMHEVLKPQIVVPCHGEYRHLR
EHSRLAMGKGMAGIVAANGMMVELSGNAPGVTEHIEVGRTYLDGDAFVGQYDGVIRERMKMALNGMVVVALIVDESDEVL
EDAWVQLKGLPEVGSSGVSLQELVEDDIARLLPRLDAKIIDDDDKLEEAVKRVARKVCLQEIGKKPEVTLLVSRLMAE
>Mature_557_residues
SDRNRLIYLPIGGAGEIGMNCYVYGYGPEGQERLIVVDTGVAFPDMDGQPGVDLILPDVDWLEDRKGRIEAIFITHAHED
HVGAVGHLWGRLEAPVYCRKFTAIHAMRKMDEAGHDAAQVRVVEAYPDVVEAGPFKVSFAPVSHSIPEASGLVIDSDAGR
VIHSGDYKIDRSPVVGEAFDEDMWREIASDGVLAYVCDSTNVFSRHPGRSESELPPQITELVAKAKGMVVATTFASNIAR
LQTLADAGIAAGRSICLMGRAMQRMVKAGREAGVLTNFPTTVSPEDALDIPRESLMLIVTGSQGERRAASASLSRGKYLG
HELKEGDTFLFSSKTIPGNEVPVAYIQNSLAEIGVEIVDDTSGFYHVSGHANRPDIEVMHEVLKPQIVVPCHGEYRHLRE
HSRLAMGKGMAGIVAANGMMVELSGNAPGVTEHIEVGRTYLDGDAFVGQYDGVIRERMKMALNGMVVVALIVDESDEVLE
DAWVQLKGLPEVGSSGVSLQELVEDDIARLLPRLDAKIIDDDDKLEEAVKRVARKVCLQEIGKKPEVTLLVSRLMAE

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 60642; Mature: 60511

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU ; PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRNRLIYLPIGGAGEIGMNCYVYGYGPEGQERLIVVDTGVAFPDMDGQPGVDLILPDV
CCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC
DWLEDRKGRIEAIFITHAHEDHVGAVGHLWGRLEAPVYCRKFTAIHAMRKMDEAGHDAAQ
HHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHE
VRVVEAYPDVVEAGPFKVSFAPVSHSIPEASGLVIDSDAGRVIHSGDYKIDRSPVVGEAF
EEEEECCCCHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCEECCCCCCCCHH
DEDMWREIASDGVLAYVCDSTNVFSRHPGRSESELPPQITELVAKAKGMVVATTFASNIA
HHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHH
RLQTLADAGIAAGRSICLMGRAMQRMVKAGREAGVLTNFPTTVSPEDALDIPRESLMLIV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHCCCCCCEEEEE
TGSQGERRAASASLSRGKYLGHELKEGDTFLFSSKTIPGNEVPVAYIQNSLAEIGVEIVD
ECCCCCHHHHHHHHHCCHHHCCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE
DTSGFYHVSGHANRPDIEVMHEVLKPQIVVPCHGEYRHLREHSRLAMGKGMAGIVAANGM
CCCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCE
MVELSGNAPGVTEHIEVGRTYLDGDAFVGQYDGVIRERMKMALNGMVVVALIVDESDEVL
EEEECCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCHHHH
EDAWVQLKGLPEVGSSGVSLQELVEDDIARLLPRLDAKIIDDDDKLEEAVKRVARKVCLQ
HHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHH
EIGKKPEVTLLVSRLMAE
HHCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SDRNRLIYLPIGGAGEIGMNCYVYGYGPEGQERLIVVDTGVAFPDMDGQPGVDLILPDV
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC
DWLEDRKGRIEAIFITHAHEDHVGAVGHLWGRLEAPVYCRKFTAIHAMRKMDEAGHDAAQ
HHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHE
VRVVEAYPDVVEAGPFKVSFAPVSHSIPEASGLVIDSDAGRVIHSGDYKIDRSPVVGEAF
EEEEECCCCHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCEECCCCCCCCHH
DEDMWREIASDGVLAYVCDSTNVFSRHPGRSESELPPQITELVAKAKGMVVATTFASNIA
HHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHH
RLQTLADAGIAAGRSICLMGRAMQRMVKAGREAGVLTNFPTTVSPEDALDIPRESLMLIV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHCCCCCCEEEEE
TGSQGERRAASASLSRGKYLGHELKEGDTFLFSSKTIPGNEVPVAYIQNSLAEIGVEIVD
ECCCCCHHHHHHHHHCCHHHCCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE
DTSGFYHVSGHANRPDIEVMHEVLKPQIVVPCHGEYRHLREHSRLAMGKGMAGIVAANGM
CCCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCE
MVELSGNAPGVTEHIEVGRTYLDGDAFVGQYDGVIRERMKMALNGMVVVALIVDESDEVL
EEEECCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCHHHH
EDAWVQLKGLPEVGSSGVSLQELVEDDIARLLPRLDAKIIDDDDKLEEAVKRVARKVCLQ
HHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHH
EIGKKPEVTLLVSRLMAE
HHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]