Click here to switch to the map view.

The map label for this gene is ydgD [H]

Identifier: 89053552

GI number: 89053552

Start: 1017589

End: 1018767

Strand: Reverse

Name: ydgD [H]

Synonym: Jann_1061

Alternate gene names: 89053552

Gene position: 1018767-1017589 (Counterclockwise)

Preceding gene: 89053553

Following gene: 89053544

Centisome position: 23.59

GC content: 61.58

Gene sequence:

>1179_bases
ATGACATTCAGACATTTTGCCGCCCTGCCCGCAGTGCTTTTACTTTTCGCGGCCCCTACAGCCCAGGCCCAGGACGTCAC
ACTGGACCCGACATTTGGCGAAATCACCCTCGCCTCCAACTTCCAGCCCGACCCCAACCGCACCACCCTCGCCGCCGGTG
GACCCAACCAGGGGACCTACACCGACAGCCGCTCGGGCGATACGTGCAGGGGCTTTTTCGCCGACGCCCCGGACCTGCGC
CTGCAATTTGAAACGGCTGATTTCGGCTTCCCCCTGTCGGTCCACGTGGAGGCCGGTGCCGATACCGTTATGCTCATTAA
CGGCCCGGACGGCGCGTGGCATTGCAATGACGATTTCAGCGGCCTGAACCCGGCGATCAATTTCGATACCCCCCTGGGCG
GCCAGTATGACATCTGGATCGGCACCTATGAGGATCTCGCGCCCAATTACCCGACGGCAGACGTTCTGATCACCGAGCTT
GGCCCCCCGGAGATTAACTTTGACCGCGCGTTCTTCGGCAATGATGACCGCGTGATCATCGACGCCGCCACCGCGCCGTG
GAACATGATCGGTTTTGTGGATCTTTCGGAGGCCAGCTGCACCGGCACCCTTGTGGGGCCTGCGATGGTTGTGACCTCTG
CCCATTGCATTGTGGAGGATGGCCAGATCGACACCCCCCCGGTGGAGTTCCTGGCGGGCTTCCAGAACGGCGAATATGTG
GCGCGCTCGGGCATCAGCGGCTTCCACGTGGCCCCCGGCTATATCGACGGCGAGCAGGAGGGGTCAGACTTCGCCTTCAT
CTTCCTGGAGGAGCGCTTGGGCGATCAGCTGGGGTGGATGGATCTGGGTCTTCTGAATGACGCCGAGGTGGCCGCGATGC
AAGCGGGCCAGGGCCCGGAGATCCTGCAGGCAGGCTACAGCTATGACCAGCAGGGCGTACTGACGGGCAATCTGGGGTGT
CCGTTCATCGAATTGGGCGAAGACAGCACCCTGATCCACGAATGCGATACGTTGCAAGGCGACAGCGGCTCCCCGTTGTT
TATTCAGGACGGGGACCGTTATCGGATCATCGGTGTGGAATCGCGGACCGATAACCAGCCCGATCAGGATTTTGATCGCA
ACATTGCCATGTACACGGACTCCGTCCTGCGGGAATTGGCGACCTTACCGCCACGGTGA

Upstream 100 bases:

>100_bases
CCGAGCTTGCCGCAGTCCCAGTCTTGGCCCTTACCCTTGCCCGGGTGAACATAGGGGCGTAGCGTCCCATAGGTGCACGC
CATTTGACGGAAAACACCTT

Downstream 100 bases:

>100_bases
ACGACCACGTCCTGGGCGCCACACCTCTCAGGACACTGAAAACGGCGCCGAACGAGGGTTCGACGCCGTCAACTTGTCAC
GGGGCTGGATCTTAACGGCA

Product: peptidase S1 and S6, chymotrypsin/Hap

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MTFRHFAALPAVLLLFAAPTAQAQDVTLDPTFGEITLASNFQPDPNRTTLAAGGPNQGTYTDSRSGDTCRGFFADAPDLR
LQFETADFGFPLSVHVEAGADTVMLINGPDGAWHCNDDFSGLNPAINFDTPLGGQYDIWIGTYEDLAPNYPTADVLITEL
GPPEINFDRAFFGNDDRVIIDAATAPWNMIGFVDLSEASCTGTLVGPAMVVTSAHCIVEDGQIDTPPVEFLAGFQNGEYV
ARSGISGFHVAPGYIDGEQEGSDFAFIFLEERLGDQLGWMDLGLLNDAEVAAMQAGQGPEILQAGYSYDQQGVLTGNLGC
PFIELGEDSTLIHECDTLQGDSGSPLFIQDGDRYRIIGVESRTDNQPDQDFDRNIAMYTDSVLRELATLPPR

Sequences:

>Translated_392_residues
MTFRHFAALPAVLLLFAAPTAQAQDVTLDPTFGEITLASNFQPDPNRTTLAAGGPNQGTYTDSRSGDTCRGFFADAPDLR
LQFETADFGFPLSVHVEAGADTVMLINGPDGAWHCNDDFSGLNPAINFDTPLGGQYDIWIGTYEDLAPNYPTADVLITEL
GPPEINFDRAFFGNDDRVIIDAATAPWNMIGFVDLSEASCTGTLVGPAMVVTSAHCIVEDGQIDTPPVEFLAGFQNGEYV
ARSGISGFHVAPGYIDGEQEGSDFAFIFLEERLGDQLGWMDLGLLNDAEVAAMQAGQGPEILQAGYSYDQQGVLTGNLGC
PFIELGEDSTLIHECDTLQGDSGSPLFIQDGDRYRIIGVESRTDNQPDQDFDRNIAMYTDSVLRELATLPPR
>Mature_391_residues
TFRHFAALPAVLLLFAAPTAQAQDVTLDPTFGEITLASNFQPDPNRTTLAAGGPNQGTYTDSRSGDTCRGFFADAPDLRL
QFETADFGFPLSVHVEAGADTVMLINGPDGAWHCNDDFSGLNPAINFDTPLGGQYDIWIGTYEDLAPNYPTADVLITELG
PPEINFDRAFFGNDDRVIIDAATAPWNMIGFVDLSEASCTGTLVGPAMVVTSAHCIVEDGQIDTPPVEFLAGFQNGEYVA
RSGISGFHVAPGYIDGEQEGSDFAFIFLEERLGDQLGWMDLGLLNDAEVAAMQAGQGPEILQAGYSYDQQGVLTGNLGCP
FIELGEDSTLIHECDTLQGDSGSPLFIQDGDRYRIIGVESRTDNQPDQDFDRNIAMYTDSVLRELATLPPR

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=227, Percent_Identity=28.1938325991189, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 42275; Mature: 42144

Theoretical pI: Translated: 3.71; Mature: 3.71

Prosite motif: PS00135 TRYPSIN_SER ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRHFAALPAVLLLFAAPTAQAQDVTLDPTFGEITLASNFQPDPNRTTLAAGGPNQGTY
CCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCCCCCC
TDSRSGDTCRGFFADAPDLRLQFETADFGFPLSVHVEAGADTVMLINGPDGAWHCNDDFS
CCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCEECCCCCC
GLNPAINFDTPLGGQYDIWIGTYEDLAPNYPTADVLITELGPPEINFDRAFFGNDDRVII
CCCCCEECCCCCCCEEEEEEECHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEE
DAATAPWNMIGFVDLSEASCTGTLVGPAMVVTSAHCIVEDGQIDTPPVEFLAGFQNGEYV
EECCCCCEEEEEEECCCCCCCEEEECCEEEEEECEEEEECCCCCCCHHHHHCCCCCCCEE
ARSGISGFHVAPGYIDGEQEGSDFAFIFLEERLGDQLGWMDLGLLNDAEVAAMQAGQGPE
ECCCCCCEEECCCEECCCCCCCCEEEEEEEHHCCCCCCCEEECCCCCCHHHEECCCCCHH
ILQAGYSYDQQGVLTGNLGCPFIELGEDSTLIHECDTLQGDSGSPLFIQDGDRYRIIGVE
HHHHCCCCCCCCEEECCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEECCCEEEEEEEC
SRTDNQPDQDFDRNIAMYTDSVLRELATLPPR
CCCCCCCCHHHHCCEEEHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TFRHFAALPAVLLLFAAPTAQAQDVTLDPTFGEITLASNFQPDPNRTTLAAGGPNQGTY
CCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCCCCCC
TDSRSGDTCRGFFADAPDLRLQFETADFGFPLSVHVEAGADTVMLINGPDGAWHCNDDFS
CCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCEECCCCCC
GLNPAINFDTPLGGQYDIWIGTYEDLAPNYPTADVLITELGPPEINFDRAFFGNDDRVII
CCCCCEECCCCCCCEEEEEEECHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEE
DAATAPWNMIGFVDLSEASCTGTLVGPAMVVTSAHCIVEDGQIDTPPVEFLAGFQNGEYV
EECCCCCEEEEEEECCCCCCCEEEECCEEEEEECEEEEECCCCCCCHHHHHCCCCCCCEE
ARSGISGFHVAPGYIDGEQEGSDFAFIFLEERLGDQLGWMDLGLLNDAEVAAMQAGQGPE
ECCCCCCEEECCCEECCCCCCCCEEEEEEEHHCCCCCCCEEECCCCCCHHHEECCCCCHH
ILQAGYSYDQQGVLTGNLGCPFIELGEDSTLIHECDTLQGDSGSPLFIQDGDRYRIIGVE
HHHHCCCCCCCCEEECCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEECCCEEEEEEEC
SRTDNQPDQDFDRNIAMYTDSVLRELATLPPR
CCCCCCCCHHHHCCEEEHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]