Click here to switch to the map view.

The map label for this gene is 89053484

Identifier: 89053484

GI number: 89053484

Start: 950901

End: 951869

Strand: Reverse

Name: 89053484

Synonym: Jann_0993

Alternate gene names: NA

Gene position: 951869-950901 (Counterclockwise)

Preceding gene: 89053485

Following gene: 89053483

Centisome position: 22.04

GC content: 59.44

Gene sequence:

>969_bases
ATGGACCTCTCAATCGAACCTCTCATCTATATCGGCATTTTTGTTGGTGTGATCATGCTGGTGAACGGCGTCTATCTGGC
GGTGTTTGGCAAGTCGATCAGCCTGAATGCACGTGTCAACCGGCGCCTGACGATGCTGGAACAGGGCACCTCGCGGGAGG
ATGTTCTGGACAAGCTTCGCAAGGAGATGGACCAGCACAAAGGCGGGATTAAGCTACCGTTCTACACAATGATCGCCGAC
AAGGCGCAAAAGGGGAATATCGCCTTCACGCCGCCGCAACTGATGTTGGTGATGGCGGGCGCTGCGGTCGCCGCATTCGT
GCTGCTGCAGGTTTTGACAACGGCATCCCTGCCAATCAGCGTGCTCTGCGCCGTCGCCATGGGGGTGGGTGGCGTCTATC
TTTGGGTCAGCCGCACGGCCAAAAAGCGCCTTTCGCTGTTGGAAGAACAATTGCCCGACGCCGTGGAACTGATGGTCCGC
TCGCTGCGGGTGGGCCACCCCTTTGTGGCCTCCATCAACACCGTGTCGCGCGAGATGTCAGATCCTATCGCATCCGAGCT
TGGCGTCATCGCGGATGAGGCCGCCTATGGCCGTGACGTTGCGGAATCGATTCGCGCCATGGCCGACCGGCTGGACATCC
AAGACCTTCGCTTCCTGGCGGTGGCTGTGGGTATCCAGCAAACTTCCGGCGGCAACCTTGCCGAGATTCTGGCAGGCCTC
GCAGACGTCATGCGCGCGCGCTTCAAGCTGTTCCGCAAAGTCCGCGTGATCACGGCGGAAGCGCGCGGATCCGGCAACTT
TCTATCGGTCTTCCCGATCCTCGCGCTGGTCGGCATCAACGTGATGCAGCCCGACTATTATTCGGAGGTCATTGATACTC
CGGTCTTCATTCCGGCCGCCGCCGGCGTTGCCGTCGCTTTGGGCCTGAATTGGGTCATCATGCGCGTCCTCGTAAATATC
AAAGTCTGA

Upstream 100 bases:

>100_bases
CGGCGTGCGGTCCTATTATTCCGAGCGGTTCCGGCAGTGGGGCTATGACCTGCCCGCGTCGATCTATGAACCCATGGCAG
CCCAGTAAGGAACCCGTCCG

Downstream 100 bases:

>100_bases
ACAAGCCCCATAAGGGACGGCCCCCTCGGGGGTACGTCGCATTCGTGAAAGAGCAGCCCGATGGAATTTCTCACCGACCT
TTTCGACAGTGCCAACGCGT

Product: type II secretion system protein

Products: NA

Alternate protein names: Flp Pilus Assembly Protein TadB; Type II Secretion System F Domain Protein; Pilus Assembly Protein; Type II Secretion System F Domain-Containing Protein; Flp Pilus Assembly Protein; Bacterial Type II Secretion System Protein F Domain; Pilus Assembly Protein TadB; Type II/IV Secretion System Protein TadC Subfamily; TadB Protein; Type II Secretion System F Domain; Tad Secretion System Pilus Assembly Protein; Type II Secretion System Protein F; Secretion System Protein; Type II Secretion System; Type II Secretion System Protein F Domain; Secretion System Protein TadB; Tight Adherence TadB-Related Transmembrane Protein; Bacterial Type II Secretion System Protein F Domain Protein; Flp Pilus Assembly Protein TadC; Integral Membrane Protein; TadB-Like Pilus Assembly Protein; Tad Secretion System Secretion Accessory Protein; Component Of Type IV Pilus; Type II Secretion System Integral Membrane Subunit; Tight Adherence TadB-Like Transmembrane Protein; Components Of Type IV Pilus; TadC Family Type II/IV Secretion System Protein

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MDLSIEPLIYIGIFVGVIMLVNGVYLAVFGKSISLNARVNRRLTMLEQGTSREDVLDKLRKEMDQHKGGIKLPFYTMIAD
KAQKGNIAFTPPQLMLVMAGAAVAAFVLLQVLTTASLPISVLCAVAMGVGGVYLWVSRTAKKRLSLLEEQLPDAVELMVR
SLRVGHPFVASINTVSREMSDPIASELGVIADEAAYGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGL
ADVMRARFKLFRKVRVITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMRVLVNI
KV

Sequences:

>Translated_322_residues
MDLSIEPLIYIGIFVGVIMLVNGVYLAVFGKSISLNARVNRRLTMLEQGTSREDVLDKLRKEMDQHKGGIKLPFYTMIAD
KAQKGNIAFTPPQLMLVMAGAAVAAFVLLQVLTTASLPISVLCAVAMGVGGVYLWVSRTAKKRLSLLEEQLPDAVELMVR
SLRVGHPFVASINTVSREMSDPIASELGVIADEAAYGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGL
ADVMRARFKLFRKVRVITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMRVLVNI
KV
>Mature_322_residues
MDLSIEPLIYIGIFVGVIMLVNGVYLAVFGKSISLNARVNRRLTMLEQGTSREDVLDKLRKEMDQHKGGIKLPFYTMIAD
KAQKGNIAFTPPQLMLVMAGAAVAAFVLLQVLTTASLPISVLCAVAMGVGGVYLWVSRTAKKRLSLLEEQLPDAVELMVR
SLRVGHPFVASINTVSREMSDPIASELGVIADEAAYGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGL
ADVMRARFKLFRKVRVITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMRVLVNI
KV

Specific function: Unknown

COG id: COG4965

COG function: function code U; Flp pilus assembly protein TadB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34858; Mature: 34858

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSIEPLIYIGIFVGVIMLVNGVYLAVFGKSISLNARVNRRLTMLEQGTSREDVLDKLR
CCCCCCHHHHHHHHHHHHHHHCCHHEEEECCCEEECCHHHHHHHHHHCCCCHHHHHHHHH
KEMDQHKGGIKLPFYTMIADKAQKGNIAFTPPQLMLVMAGAAVAAFVLLQVLTTASLPIS
HHHHHCCCCCCCCHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLCAVAMGVGGVYLWVSRTAKKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
DPIASELGVIADEAAYGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGL
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ADVMRARFKLFRKVRVITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAA
HHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEHHH
AGVAVALGLNWVIMRVLVNIKV
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLSIEPLIYIGIFVGVIMLVNGVYLAVFGKSISLNARVNRRLTMLEQGTSREDVLDKLR
CCCCCCHHHHHHHHHHHHHHHCCHHEEEECCCEEECCHHHHHHHHHHCCCCHHHHHHHHH
KEMDQHKGGIKLPFYTMIADKAQKGNIAFTPPQLMLVMAGAAVAAFVLLQVLTTASLPIS
HHHHHCCCCCCCCHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLCAVAMGVGGVYLWVSRTAKKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
DPIASELGVIADEAAYGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGL
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ADVMRARFKLFRKVRVITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAA
HHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEHHH
AGVAVALGLNWVIMRVLVNIKV
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA