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The map label for this gene is ypdF [C]

Identifier: 89053341

GI number: 89053341

Start: 805051

End: 806229

Strand: Reverse

Name: ypdF [C]

Synonym: Jann_0850

Alternate gene names: 89053341

Gene position: 806229-805051 (Counterclockwise)

Preceding gene: 89053347

Following gene: 89053340

Centisome position: 18.67

GC content: 64.97

Gene sequence:

>1179_bases
ATGCCAGACCGCATTCCAAACTTCGATCGTTCCGAATACGACACCCGTCTGGCCAAGATCCGCACGGCCATGGGGGCCGC
CGACCTGGACTGGCTGATCGTGACCGACCCGTCGAATATGGCCTGGCTCACGGGCTACGACGGCTGGTCGTTCTACGTCC
ATCAGGCGGTGGTTGTCGGCCCCACGGGCATGCCCCTCTGGTGGGGTCGGGCGATGGACAGCCTCGGCGCGCTGCGCACT
GTCTACATGCCCGATGATCACGTCGTGGGTTACGATGATACCTACGTGCAAAACCCCGCAAAACATCCCCATGAAACGCT
AGCCGCGCTGCTGACAACCCGCGGGGCCGCCAAAGCCCGCATCGGGGTGGAACTGGACAATTACTATTATTCCGCTGCCG
CCCACGCGGCCCTTCTGGCGCATCTGCCCAACGCGCGCCTCGTGGATGCCACCGGCCTGGTGAACTGGCAACGGGCCGTG
AAATCCCCGGCGGAAGTCGCCCGCATGCGCAAAGCCGCTGGTATTGTGGAGGCGATGCACCGCCGCATCCTGGAGGTCGC
CGAACCCGGCCTGCCCAAGCACCACCTGGTGGCCGAGATCCTCGCGACGTCCGTGAAGGGCACAGACGACGCCTGGGGCG
ATTATCCCGCCATCGTGCCGCTCACCCCCTCGGGCATGGACGCCACCGCACCGCATCTGACTTGGGATGACAGGCCGATG
CAAACCGGGGAGGCGACGTTTTTTGAGATTGCGGGCGTCTACCGCCGCTACCATTGCCCGCAATCCCGCACGCTCTTCCT
AGGCTCCATGCCCGATGCCTACAGGCGCGCCGAACAGGCGGTGCTGGAGGCCAGCGCCAAGGCCCTGTCCACCGCGCGGC
CCGGCACTACCTGCGGTGAGGTCGCCGACGCGTTCAACACCACCCTCAACCGTCTTGGGTACGAGAAGGACAGCCGCTGC
GGCTATGCCATCGGCCTCAGCTATCCGCCCGATTGGGGTGAGCGGACCATGTCCTTCCGCGCGGACGACACCACCGTTCT
GAAACCCGGCATGACCTTTCACTTCATGCCCGCCCTCTGGCTGGAGGACGGCGGGATCGAGATCACCGAACCGATCCTGA
TCACTGAAACAGGCGCCGAGTGCCTGTCGTCCCTGCCCCGCGAAGTCTTCGTCAAATGA

Upstream 100 bases:

>100_bases
GACAGGCCCGAAGCCCCATCACGCAAAGCACTTATGTCGCAAACAGGCTGGACCGCGCCGGACATCCCAGTGAACCTGTC
CGCGATCCCAAGGAGCCGCC

Downstream 100 bases:

>100_bases
CAGCTGCGAGGAGGAGCCGGAGGCCCCGAGGAGGCGCTGACAGCCCGCAAGGACCCACCCCATGACCCTCAGCTTCGATA
TCGACACGCCGGGCAAGACC

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MPDRIPNFDRSEYDTRLAKIRTAMGAADLDWLIVTDPSNMAWLTGYDGWSFYVHQAVVVGPTGMPLWWGRAMDSLGALRT
VYMPDDHVVGYDDTYVQNPAKHPHETLAALLTTRGAAKARIGVELDNYYYSAAAHAALLAHLPNARLVDATGLVNWQRAV
KSPAEVARMRKAAGIVEAMHRRILEVAEPGLPKHHLVAEILATSVKGTDDAWGDYPAIVPLTPSGMDATAPHLTWDDRPM
QTGEATFFEIAGVYRRYHCPQSRTLFLGSMPDAYRRAEQAVLEASAKALSTARPGTTCGEVADAFNTTLNRLGYEKDSRC
GYAIGLSYPPDWGERTMSFRADDTTVLKPGMTFHFMPALWLEDGGIEITEPILITETGAECLSSLPREVFVK

Sequences:

>Translated_392_residues
MPDRIPNFDRSEYDTRLAKIRTAMGAADLDWLIVTDPSNMAWLTGYDGWSFYVHQAVVVGPTGMPLWWGRAMDSLGALRT
VYMPDDHVVGYDDTYVQNPAKHPHETLAALLTTRGAAKARIGVELDNYYYSAAAHAALLAHLPNARLVDATGLVNWQRAV
KSPAEVARMRKAAGIVEAMHRRILEVAEPGLPKHHLVAEILATSVKGTDDAWGDYPAIVPLTPSGMDATAPHLTWDDRPM
QTGEATFFEIAGVYRRYHCPQSRTLFLGSMPDAYRRAEQAVLEASAKALSTARPGTTCGEVADAFNTTLNRLGYEKDSRC
GYAIGLSYPPDWGERTMSFRADDTTVLKPGMTFHFMPALWLEDGGIEITEPILITETGAECLSSLPREVFVK
>Mature_391_residues
PDRIPNFDRSEYDTRLAKIRTAMGAADLDWLIVTDPSNMAWLTGYDGWSFYVHQAVVVGPTGMPLWWGRAMDSLGALRTV
YMPDDHVVGYDDTYVQNPAKHPHETLAALLTTRGAAKARIGVELDNYYYSAAAHAALLAHLPNARLVDATGLVNWQRAVK
SPAEVARMRKAAGIVEAMHRRILEVAEPGLPKHHLVAEILATSVKGTDDAWGDYPAIVPLTPSGMDATAPHLTWDDRPMQ
TGEATFFEIAGVYRRYHCPQSRTLFLGSMPDAYRRAEQAVLEASAKALSTARPGTTCGEVADAFNTTLNRLGYEKDSRCG
YAIGLSYPPDWGERTMSFRADDTTVLKPGMTFHFMPALWLEDGGIEITEPILITETGAECLSSLPREVFVK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=257, Percent_Identity=29.9610894941634, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1789275, Length=270, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43200; Mature: 43069

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRIPNFDRSEYDTRLAKIRTAMGAADLDWLIVTDPSNMAWLTGYDGWSFYVHQAVVVG
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCEEEEEEEEEEC
PTGMPLWWGRAMDSLGALRTVYMPDDHVVGYDDTYVQNPAKHPHETLAALLTTRGAAKAR
CCCCCHHHHHHHHHHHCEEEEECCCCCEECCCCHHCCCCCCCHHHHHHHHHHCCCCCCEE
IGVELDNYYYSAAAHAALLAHLPNARLVDATGLVNWQRAVKSPAEVARMRKAAGIVEAMH
EEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
RRILEVAEPGLPKHHLVAEILATSVKGTDDAWGDYPAIVPLTPSGMDATAPHLTWDDRPM
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
QTGEATFFEIAGVYRRYHCPQSRTLFLGSMPDAYRRAEQAVLEASAKALSTARPGTTCGE
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VADAFNTTLNRLGYEKDSRCGYAIGLSYPPDWGERTMSFRADDTTVLKPGMTFHFMPALW
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCEEECCCCEEEECCEEE
LEDGGIEITEPILITETGAECLSSLPREVFVK
EECCCCEEECCEEEECCHHHHHHHCCHHHCCC
>Mature Secondary Structure 
PDRIPNFDRSEYDTRLAKIRTAMGAADLDWLIVTDPSNMAWLTGYDGWSFYVHQAVVVG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCEEEEEEEEEEC
PTGMPLWWGRAMDSLGALRTVYMPDDHVVGYDDTYVQNPAKHPHETLAALLTTRGAAKAR
CCCCCHHHHHHHHHHHCEEEEECCCCCEECCCCHHCCCCCCCHHHHHHHHHHCCCCCCEE
IGVELDNYYYSAAAHAALLAHLPNARLVDATGLVNWQRAVKSPAEVARMRKAAGIVEAMH
EEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
RRILEVAEPGLPKHHLVAEILATSVKGTDDAWGDYPAIVPLTPSGMDATAPHLTWDDRPM
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
QTGEATFFEIAGVYRRYHCPQSRTLFLGSMPDAYRRAEQAVLEASAKALSTARPGTTCGE
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VADAFNTTLNRLGYEKDSRCGYAIGLSYPPDWGERTMSFRADDTTVLKPGMTFHFMPALW
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCEEECCCCEEEECCEEE
LEDGGIEITEPILITETGAECLSSLPREVFVK
EECCCCEEECCEEEECCHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]