| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053272
Identifier: 89053272
GI number: 89053272
Start: 740799
End: 742205
Strand: Reverse
Name: 89053272
Synonym: Jann_0781
Alternate gene names: NA
Gene position: 742205-740799 (Counterclockwise)
Preceding gene: 89053273
Following gene: 89053270
Centisome position: 17.19
GC content: 65.46
Gene sequence:
>1407_bases ATGCCCCGCACGCTCTGCTCTGCCCTTGCCCTTTGCCTGTTTGCCGCCCCCCTCAGCGCGGAAACGCTGATTGTCAGCAA TCCCGATGCCTCCGGAGACGGCTCGTTTCAGGCGGCGCTTGAGGCGGCGGGGGCGTCCCACGGGGCCTCCACCATCGTGA TTGCGCTGGACGACACGCGGATCGCGACCGACACCGGGCTGACCTATCAGGGCCCCTCGCCGCTGACGATCTATGGCAAT GGTCTGATCCTGTCGTCGGAGGCCAATGTGACGCTGTTTTCGGTCACCGACCCCGGCATTCTGTCGCTCCACGACATGGA GCTGGTCGGCCCCGGCGGCTTCAGCCTGGGCGCGCGCGGGGATATCGAAGGCCCGGCGGGCAAGGGCATTTTCCTGGATG TGGCCGAGGATGCGGACGGCACCATCGCCCTGCGGCTCACGGGCGTGCAGGTGCGCGATGTGGCGGGGCACGGCATCCAC ATCTCGGATTGCACTTTGGCCGATGAGTGTGGCGGCGGCGAAGGCGGTGAGGGCGACGGGTCTGTCGCGTCGATTCTGGT GGACATGTACGGTGTGGAGATCGCCAATGTCGGGCAGGGCAGCTTTGACGCCGACGGGTTGCGCGTCGATGAGCGCGGCA TCGGCGACATCACCCTGACGGGCATGTATGTGAACGTGGCCCGTGTGGGCGCCGATGGGATCGAATTGGATGAGGGCCAG GAGGGCGACGTAACCGTCGACCTGATCCACGCCAATTTCACTGAGAACGGCGATTATTGCGACCCTGCGGTGTTGGAGGC CTTCCTGCCCGACGTGCAGGAGGGGGAGTTTGATCAGGGCCAGATGGCCGTGGCGGACCTGCCGCAACCGGGCGCGGGCA TCCCCGACCCGTCCTGCATCGAGCTGGATCTGGACACCTACGCTGACGGCAGCGTGGAGGCGTTTGAATATGCCATCGAC ATGGACGACGGGTTGGATCTGGACGAAGGCGGACCCGGCGATATCGTGGCCAGCTTCACCATCGGCGAGATGATCGGCAA CTTCGACGAAGGCTATGATTTCGACGAGGCGGGACCGGGCGACATCGATGTGGTCTTCACCGGCATCATCGGCAACGGTA ACACCGACGACGCGATCAAACTGTCCGAGGAAGGCCCGGGCAGCGTCTACGTGACGGCCACGGCGATCGAGGCATCGTCC AACGGCGGCGTCGGCGTGGTGGCAGAAGAAGAGGACGGCGGCGATCTGTTGATGGTCATCGTCGGCTCCGCCACGGCGGG AAACGACGGCGGAGAGCTGGGGATTGAGGCGGTGCAGGACGACGACGGCGAGGGCCGCGTCCACGTCATCGACACTGAGG TTGCCGACGGGATCGAGACCGATGGCGTGACGCTGGACGCGGACTGA
Upstream 100 bases:
>100_bases CTGGACGCAGTAGGCCCAGCGCGCCATCTGTCATCATGCTGTCATCGGCGTCCGGGTATCTGGGCGCCGAACGCGTTTGA CCCTACAGGATACCGCCCCC
Downstream 100 bases:
>100_bases GGGACCTGCGCAGGGGCCCCGCCCAAGGATCAAGGCCGGGGCGGTGTCACGCGGCCCAGGGGGGTTTGGGGTGGCCCGAC CCGATGGCATCCGGCCGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MPRTLCSALALCLFAAPLSAETLIVSNPDASGDGSFQAALEAAGASHGASTIVIALDDTRIATDTGLTYQGPSPLTIYGN GLILSSEANVTLFSVTDPGILSLHDMELVGPGGFSLGARGDIEGPAGKGIFLDVAEDADGTIALRLTGVQVRDVAGHGIH ISDCTLADECGGGEGGEGDGSVASILVDMYGVEIANVGQGSFDADGLRVDERGIGDITLTGMYVNVARVGADGIELDEGQ EGDVTVDLIHANFTENGDYCDPAVLEAFLPDVQEGEFDQGQMAVADLPQPGAGIPDPSCIELDLDTYADGSVEAFEYAID MDDGLDLDEGGPGDIVASFTIGEMIGNFDEGYDFDEAGPGDIDVVFTGIIGNGNTDDAIKLSEEGPGSVYVTATAIEASS NGGVGVVAEEEDGGDLLMVIVGSATAGNDGGELGIEAVQDDDGEGRVHVIDTEVADGIETDGVTLDAD
Sequences:
>Translated_468_residues MPRTLCSALALCLFAAPLSAETLIVSNPDASGDGSFQAALEAAGASHGASTIVIALDDTRIATDTGLTYQGPSPLTIYGN GLILSSEANVTLFSVTDPGILSLHDMELVGPGGFSLGARGDIEGPAGKGIFLDVAEDADGTIALRLTGVQVRDVAGHGIH ISDCTLADECGGGEGGEGDGSVASILVDMYGVEIANVGQGSFDADGLRVDERGIGDITLTGMYVNVARVGADGIELDEGQ EGDVTVDLIHANFTENGDYCDPAVLEAFLPDVQEGEFDQGQMAVADLPQPGAGIPDPSCIELDLDTYADGSVEAFEYAID MDDGLDLDEGGPGDIVASFTIGEMIGNFDEGYDFDEAGPGDIDVVFTGIIGNGNTDDAIKLSEEGPGSVYVTATAIEASS NGGVGVVAEEEDGGDLLMVIVGSATAGNDGGELGIEAVQDDDGEGRVHVIDTEVADGIETDGVTLDAD >Mature_467_residues PRTLCSALALCLFAAPLSAETLIVSNPDASGDGSFQAALEAAGASHGASTIVIALDDTRIATDTGLTYQGPSPLTIYGNG LILSSEANVTLFSVTDPGILSLHDMELVGPGGFSLGARGDIEGPAGKGIFLDVAEDADGTIALRLTGVQVRDVAGHGIHI SDCTLADECGGGEGGEGDGSVASILVDMYGVEIANVGQGSFDADGLRVDERGIGDITLTGMYVNVARVGADGIELDEGQE GDVTVDLIHANFTENGDYCDPAVLEAFLPDVQEGEFDQGQMAVADLPQPGAGIPDPSCIELDLDTYADGSVEAFEYAIDM DDGLDLDEGGPGDIVASFTIGEMIGNFDEGYDFDEAGPGDIDVVFTGIIGNGNTDDAIKLSEEGPGSVYVTATAIEASSN GGVGVVAEEEDGGDLLMVIVGSATAGNDGGELGIEAVQDDDGEGRVHVIDTEVADGIETDGVTLDAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47495; Mature: 47364
Theoretical pI: Translated: 3.34; Mature: 3.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRTLCSALALCLFAAPLSAETLIVSNPDASGDGSFQAALEAAGASHGASTIVIALDDTR CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCE IATDTGLTYQGPSPLTIYGNGLILSSEANVTLFSVTDPGILSLHDMELVGPGGFSLGARG EEECCCCEECCCCCEEEEECCEEEECCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCC DIEGPAGKGIFLDVAEDADGTIALRLTGVQVRDVAGHGIHISDCTLADECGGGEGGEGDG CCCCCCCCEEEEEEECCCCCEEEEEEECEEEEECCCCCEEEECCEEHHHCCCCCCCCCCC SVASILVDMYGVEIANVGQGSFDADGLRVDERGIGDITLTGMYVNVARVGADGIELDEGQ HHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCC EGDVTVDLIHANFTENGDYCDPAVLEAFLPDVQEGEFDQGQMAVADLPQPGAGIPDPSCI CCCEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE ELDLDTYADGSVEAFEYAIDMDDGLDLDEGGPGDIVASFTIGEMIGNFDEGYDFDEAGPG EEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCC DIDVVFTGIIGNGNTDDAIKLSEEGPGSVYVTATAIEASSNGGVGVVAEEEDGGDLLMVI CEEEEEEEEECCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEEEE VGSATAGNDGGELGIEAVQDDDGEGRVHVIDTEVADGIETDGVTLDAD EECCCCCCCCCCCCEEEEECCCCCCEEEEEECHHCCCCCCCCEEEECC >Mature Secondary Structure PRTLCSALALCLFAAPLSAETLIVSNPDASGDGSFQAALEAAGASHGASTIVIALDDTR CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCE IATDTGLTYQGPSPLTIYGNGLILSSEANVTLFSVTDPGILSLHDMELVGPGGFSLGARG EEECCCCEECCCCCEEEEECCEEEECCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCC DIEGPAGKGIFLDVAEDADGTIALRLTGVQVRDVAGHGIHISDCTLADECGGGEGGEGDG CCCCCCCCEEEEEEECCCCCEEEEEEECEEEEECCCCCEEEECCEEHHHCCCCCCCCCCC SVASILVDMYGVEIANVGQGSFDADGLRVDERGIGDITLTGMYVNVARVGADGIELDEGQ HHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCC EGDVTVDLIHANFTENGDYCDPAVLEAFLPDVQEGEFDQGQMAVADLPQPGAGIPDPSCI CCCEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE ELDLDTYADGSVEAFEYAIDMDDGLDLDEGGPGDIVASFTIGEMIGNFDEGYDFDEAGPG EEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCC DIDVVFTGIIGNGNTDDAIKLSEEGPGSVYVTATAIEASSNGGVGVVAEEEDGGDLLMVI CEEEEEEEEECCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEEEE VGSATAGNDGGELGIEAVQDDDGEGRVHVIDTEVADGIETDGVTLDAD EECCCCCCCCCCCCEEEEECCCCCCEEEEEECHHCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA