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The map label for this gene is yliC [C]

Identifier: 89053270

GI number: 89053270

Start: 738593

End: 739534

Strand: Reverse

Name: yliC [C]

Synonym: Jann_0779

Alternate gene names: 89053270

Gene position: 739534-738593 (Counterclockwise)

Preceding gene: 89053272

Following gene: 89053269

Centisome position: 17.13

GC content: 63.91

Gene sequence:

>942_bases
ATGACCCGCTACCTCCTGTTCCGCGCGCTGTCGCTTACGCTGTCGTTGATCGTGGCCAGTGCGGTCATCTTCTTCGTGAT
CGAGGTGATCCCGGGCGACCCCGCCGCCTTCATGTTGGGCCTGAACGCGACCGAGGAGGCGATTGCCAACCTGCGTGTCG
AATTGGGATTAGAGGGCGGATTGATCGAGCGCTACCTGGCCTGGGTCACGGGCATGGTGCAGGGCGATTTCGGCACGTCC
TACAATTACCGCGTGCCGGTGGCGGATCTGATCGCGGACCGGATCTGGATCTCGGTGCCGTTGGCGGTTCTGGCGCTGAT
CCTGTCAACGCTGATCGCCGTGCCCGTGGGGGTTCTGGCGGCGGCGAACCGGGGCAAACTCGGCGACGTGCTGACGATGA
TGCTGACGCAACTGGGCATCGCAGTGCCCAACTTCTGGTTCGCGATGTTTCTGGTGCTGGCCTTTGCGGTCCAGTGGCGG
CTGTTCCCGTCGGGCGGGTTCGGCGGTTGGGATGACCCCTGGGCGGCGCTTCGGTCCCTGACCCTGCCCGCCATCGCGCT
GGCCCTGCCGCAGGCGGCGATATTGGCGCGCGTCATGCGGTCCGCGTTGATCGAGACGTTGGATCAGGATTACATCCGCA
CCGCGCGGGCCAAGGGGTTGTCGCCCCGTCAAGCCATTCTGCGCCACGCGCTCCGCAACGCGCTGATCCCGGTTCTGACC
ATCATCGGGCTACAGTTCAGCTTCCTTCTGGCGGGCGCGATCATCATTGAAAACGTGTTCTACATCCCCGGTCTGGGGCG
GTTGATTTTTCAGGGCATCACGCAGCGCGATCTGGTGGTTGTGGAGAGCGTGACCATGCTGCTGGTTTTCGCGGTCATCG
TCGTGACGTTTCTGGTGGACGTGGCCTATGCCATCGTCGACCCGAGGCTGCGCCGCGCATGA

Upstream 100 bases:

>100_bases
CGTGTCAGAAAGGGGGGCGAGGCCAAATCCCCGGGGCGGAGGCGGGCAATCGCCGGTTTGCCCTATGGTTCCCCGCGCGC
TCTTTGCTTAACGTCGGCCC

Downstream 100 bases:

>100_bases
GACGGCTTCCGTTTGCCCTTGTCATTGGCGCGCTGATCACGCTGGTGTTCATCGTTTTGGCGCTGGTGTCGCTGGTCTGG
ACGCCCCATGACACGGCCAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MTRYLLFRALSLTLSLIVASAVIFFVIEVIPGDPAAFMLGLNATEEAIANLRVELGLEGGLIERYLAWVTGMVQGDFGTS
YNYRVPVADLIADRIWISVPLAVLALILSTLIAVPVGVLAAANRGKLGDVLTMMLTQLGIAVPNFWFAMFLVLAFAVQWR
LFPSGGFGGWDDPWAALRSLTLPAIALALPQAAILARVMRSALIETLDQDYIRTARAKGLSPRQAILRHALRNALIPVLT
IIGLQFSFLLAGAIIIENVFYIPGLGRLIFQGITQRDLVVVESVTMLLVFAVIVVTFLVDVAYAIVDPRLRRA

Sequences:

>Translated_313_residues
MTRYLLFRALSLTLSLIVASAVIFFVIEVIPGDPAAFMLGLNATEEAIANLRVELGLEGGLIERYLAWVTGMVQGDFGTS
YNYRVPVADLIADRIWISVPLAVLALILSTLIAVPVGVLAAANRGKLGDVLTMMLTQLGIAVPNFWFAMFLVLAFAVQWR
LFPSGGFGGWDDPWAALRSLTLPAIALALPQAAILARVMRSALIETLDQDYIRTARAKGLSPRQAILRHALRNALIPVLT
IIGLQFSFLLAGAIIIENVFYIPGLGRLIFQGITQRDLVVVESVTMLLVFAVIVVTFLVDVAYAIVDPRLRRA
>Mature_312_residues
TRYLLFRALSLTLSLIVASAVIFFVIEVIPGDPAAFMLGLNATEEAIANLRVELGLEGGLIERYLAWVTGMVQGDFGTSY
NYRVPVADLIADRIWISVPLAVLALILSTLIAVPVGVLAAANRGKLGDVLTMMLTQLGIAVPNFWFAMFLVLAFAVQWRL
FPSGGFGGWDDPWAALRSLTLPAIALALPQAAILARVMRSALIETLDQDYIRTARAKGLSPRQAILRHALRNALIPVLTI
IGLQFSFLLAGAIIIENVFYIPGLGRLIFQGITQRDLVVVESVTMLLVFAVIVVTFLVDVAYAIVDPRLRRA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=36.6559485530547, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=36.9822485207101, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=36.5079365079365, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787497, Length=312, Percent_Identity=35.2564102564103, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1787761, Length=337, Percent_Identity=34.4213649851632, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1787550, Length=277, Percent_Identity=32.4909747292419, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1788504, Length=276, Percent_Identity=28.6231884057971, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34087; Mature: 33956

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYLLFRALSLTLSLIVASAVIFFVIEVIPGDPAAFMLGLNATEEAIANLRVELGLEGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHCCCCCC
LIERYLAWVTGMVQGDFGTSYNYRVPVADLIADRIWISVPLAVLALILSTLIAVPVGVLA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AANRGKLGDVLTMMLTQLGIAVPNFWFAMFLVLAFAVQWRLFPSGGFGGWDDPWAALRSL
HCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
TLPAIALALPQAAILARVMRSALIETLDQDYIRTARAKGLSPRQAILRHALRNALIPVLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
IIGLQFSFLLAGAIIIENVFYIPGLGRLIFQGITQRDLVVVESVTMLLVFAVIVVTFLVD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VAYAIVDPRLRRA
HHHHHHCHHHHCC
>Mature Secondary Structure 
TRYLLFRALSLTLSLIVASAVIFFVIEVIPGDPAAFMLGLNATEEAIANLRVELGLEGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHCCCCCC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HHHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]