| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053247
Identifier: 89053247
GI number: 89053247
Start: 720331
End: 720663
Strand: Reverse
Name: 89053247
Synonym: Jann_0756
Alternate gene names: NA
Gene position: 720663-720331 (Counterclockwise)
Preceding gene: 89053248
Following gene: 89053246
Centisome position: 16.69
GC content: 57.66
Gene sequence:
>333_bases GTGATCACCTGCACCGTCAGATATGAGATCGACCCCGACAAGCTTCCTGAGTTTGAGGTCTACGCCCGTGCGTGGATTCA TCTGGTGACGAAACTTGGCGGGATGCACCACGGCTACCACATGCCCCATGAGGGACCGAACGACATCGCATATTGCCACT TCTCGTTCCCGTCGCTCGCTGACTATGAGGCGTACCGCGCCCGCATGTGGGACGATCCCGAATGCCTCCGCGCCTATGCC CACGCCACGGCCACCAAGTGCATTCGCAGATATGACAGATCTTTCACCAAGCCATTGATGAATGGCGCAACTGTCGATGA GCTTGGCCTCTGA
Upstream 100 bases:
>100_bases CCAAGGCGCTGGAACGCGCGGCCAAGCAGATGGGTGCGGGCGGCGGCGGGCTGCCCGGCTTGGGCGGCATGGGTGATCTG AGCGGGTTGGGTAAGAAGAA
Downstream 100 bases:
>100_bases TGACCCAGACGACGTTCCATATCCCCACGCTGGAGACCGAGCGTTTGACCCTGCGCGCCCCGGGCCCGCAGGACGTGGAA CCGTTTGCTGCCTTCTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NIPSNAP Family Containing Protein; Nipsnap Domain Protein; Nipsnap Family Containing Protein; Nipsnap; NIPSNAP Domain-Containing Protein; NIPSNAP Superfamily; Nipsnap Domain-Containing Protein; Nipsnap Family Protein
Number of amino acids: Translated: 110; Mature: 110
Protein sequence:
>110_residues MITCTVRYEIDPDKLPEFEVYARAWIHLVTKLGGMHHGYHMPHEGPNDIAYCHFSFPSLADYEAYRARMWDDPECLRAYA HATATKCIRRYDRSFTKPLMNGATVDELGL
Sequences:
>Translated_110_residues MITCTVRYEIDPDKLPEFEVYARAWIHLVTKLGGMHHGYHMPHEGPNDIAYCHFSFPSLADYEAYRARMWDDPECLRAYA HATATKCIRRYDRSFTKPLMNGATVDELGL >Mature_110_residues MITCTVRYEIDPDKLPEFEVYARAWIHLVTKLGGMHHGYHMPHEGPNDIAYCHFSFPSLADYEAYRARMWDDPECLRAYA HATATKCIRRYDRSFTKPLMNGATVDELGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12769; Mature: 12769
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITCTVRYEIDPDKLPEFEVYARAWIHLVTKLGGMHHGYHMPHEGPNDIAYCHFSFPSLA CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCH DYEAYRARMWDDPECLRAYAHATATKCIRRYDRSFTKPLMNGATVDELGL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC >Mature Secondary Structure MITCTVRYEIDPDKLPEFEVYARAWIHLVTKLGGMHHGYHMPHEGPNDIAYCHFSFPSLA CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCH DYEAYRARMWDDPECLRAYAHATATKCIRRYDRSFTKPLMNGATVDELGL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA