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The map label for this gene is rimM

Identifier: 89053239

GI number: 89053239

Start: 716245

End: 716808

Strand: Reverse

Name: rimM

Synonym: Jann_0748

Alternate gene names: 89053239

Gene position: 716808-716245 (Counterclockwise)

Preceding gene: 89053240

Following gene: 89053236

Centisome position: 16.6

GC content: 65.96

Gene sequence:

>564_bases
ATGACCAACCCGGACCACACCTGCGTCGGCGCGATCTCCGGCTCCTTTGGCGTCCGGGGCGAAGTGCGTTTGAAAAGCTT
CTGCGCAGAGCCATCGGACATCGGCTCCTACGGCCCCCTGTCCACGGAAGACGGAGCGCAGACCTACACCATTACCCTCA
CGCGGCCCGTGAAAGCGGGCTACGCGGCGATGCTCTCGGGCGTCGCCACGAAGGAGGATGCTGACGCCCTGCGCGGCACC
CGCCTTTATGCGCCCCGCTCTGCCCTGCCCTCACTGCCCGATGACGAGTTCTACCACGCCGACCTTGTGGGCCTCACGGT
CCTCGACACAGGCGGAGAGGTCATCGGCACAGTGGCGTCTGTGGCCAACCACGGCGCGGGCGACATTCTGGAACTCAGCG
GCCCGGGCCTGCCGTCCGGCCTCCTGATCCCCTTCACGCTGGCCGTCGTGCCCACGGTAGATATCGCCGCGGGCCGTGTG
ATCGTCGATATGCCCGATGGTCTTATCGGCGGCGATAAACCGGATACATCCGATACCGCGCCTCTGGGCCAGGACTTCGA
CTAA

Upstream 100 bases:

>100_bases
CTGGGGTGGATCATCGCGCTGTTGCGCGCCGATGGTCCCCCCGATCCCCTGCCAGAGGTGCAGCGGATCACCCCCGTCCC
CGTTATTGCCTGAGGCCCCT

Downstream 100 bases:

>100_bases
ACGCGCCGAACCCGCCGCACTCCAATGTCACCTTGGCAAAAAACTCTGGGGTCGGCGCCTTTCAAGGCGCGAGGGGGCTA
GCCCCCTCTCCCTCACTCTC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTNPDHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLTRPVKAGYAAMLSGVATKEDADALRGT
RLYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVASVANHGAGDILELSGPGLPSGLLIPFTLAVVPTVDIAAGRV
IVDMPDGLIGGDKPDTSDTAPLGQDFD

Sequences:

>Translated_187_residues
MTNPDHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLTRPVKAGYAAMLSGVATKEDADALRGT
RLYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVASVANHGAGDILELSGPGLPSGLLIPFTLAVVPTVDIAAGRV
IVDMPDGLIGGDKPDTSDTAPLGQDFD
>Mature_186_residues
TNPDHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLTRPVKAGYAAMLSGVATKEDADALRGTR
LYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVASVANHGAGDILELSGPGLPSGLLIPFTLAVVPTVDIAAGRVI
VDMPDGLIGGDKPDTSDTAPLGQDFD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_JANSC (Q28UE7)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508690.1
- ProteinModelPortal:   Q28UE7
- SMR:   Q28UE7
- STRING:   Q28UE7
- GeneID:   3933191
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0748
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   Q28UE7
- ProtClustDB:   PRK13828
- BioCyc:   JSP290400:JANN_0748-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19132; Mature: 19000

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPDHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLTRPVKAG
CCCCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHH
YAAMLSGVATKEDADALRGTRLYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVAS
HHHHHHCCCCCCHHHHHCCCEEECCHHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHH
VANHGAGDILELSGPGLPSGLLIPFTLAVVPTVDIAAGRVIVDMPDGLIGGDKPDTSDTA
HHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEECCCCEEEEECCCCCCCCCCCCCCCCC
PLGQDFD
CCCCCCC
>Mature Secondary Structure 
TNPDHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLTRPVKAG
CCCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHH
YAAMLSGVATKEDADALRGTRLYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVAS
HHHHHHCCCCCCHHHHHCCCEEECCHHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHH
VANHGAGDILELSGPGLPSGLLIPFTLAVVPTVDIAAGRVIVDMPDGLIGGDKPDTSDTA
HHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEECCCCEEEEECCCCCCCCCCCCCCCCC
PLGQDFD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA